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SCNPILOT_EXPT_750_BF_Rhizobiales_63_6_partial

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 6.39 Longest contig: 101.11 Kbp Bin length: 5.31 Mbp GC content: 63.21 %
Contigs count: 470 Features count: 5644 rRNAs count: 0 tRNAs count: 44

Genome completeness

megabin RP 44 / 55 MC: 15 BSCG 44 / 51 MC: 12 ASCG 9 / 38 MC: 2

Description

from ESOM, highly fragmented

Displaying items 51-100 of 470 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_2461
Class: Alphaproteobacteria (50%)
6 6335 bp 65.07 5.13 90.54
scnpilot_expt_750_bf_scaffold_4742
Species: Afipia broomeae (66.67%)
6 6147 bp 61.67 6.63 88.92
scnpilot_expt_750_bf_scaffold_4746
Phylum: Proteobacteria (83.33%)
6 5634 bp 64.34 4.61 91.32
scnpilot_expt_750_bf_scaffold_2727
Species: Afipia broomeae (100%)
6 5868 bp 63.31 6.31 90.18
scnpilot_expt_750_bf_scaffold_3044
Class: Alphaproteobacteria (50%)
6 5432 bp 66.90 5.57 90.52
scnpilot_expt_750_bf_scaffold_2492
Species: Afipia broomeae (50%)
6 6275 bp 62.69 8.09 90.60
scnpilot_expt_750_bf_scaffold_10012
Order: Rhizobiales (50%)
6 5333 bp 66.81 6.38 80.27
scnpilot_expt_750_bf_scaffold_7455
Order: Rhizobiales (50%)
6 5602 bp 66.64 6.20 90.13
scnpilot_expt_750_bf_scaffold_2250
Class: Alphaproteobacteria (50%)
6 6761 bp 65.40 5.66 83.46
scnpilot_expt_750_bf_scaffold_8518
Order: Rhizobiales (83.33%)
6 5155 bp 64.95 4.75 85.02
scnpilot_expt_750_bf_scaffold_8519
Order: Rhizobiales (66.67%)
6 5181 bp 66.03 6.66 92.36
scnpilot_expt_750_bf_scaffold_3591
Genus: Hyphomicrobium (50%)
6 6129 bp 65.83 4.85 92.76
scnpilot_expt_750_bf_scaffold_2001
Order: Rhizobiales (50%)
6 7405 bp 65.81 5.71 86.62
scnpilot_expt_750_bf_scaffold_6202
Order: Rhizobiales (50%)
6 7330 bp 63.53 7.06 81.04
scnpilot_expt_750_bf_scaffold_8274
Genus: Afipia (66.67%)
6 5207 bp 62.19 7.44 87.00
scnpilot_expt_750_bf_scaffold_4036
Class: Alphaproteobacteria (50%)
6 6743 bp 62.49 5.49 86.80
scnpilot_expt_750_bf_scaffold_4805
Species: Afipia clevelandensis (50%)
6 7841 bp 64.00 6.66 83.68
scnpilot_expt_750_bf_scaffold_3101
Class: Alphaproteobacteria (66.67%)
6 7236 bp 61.94 5.42 82.55
scnpilot_expt_750_bf_scaffold_3104
Species: Afipia broomeae (50%)
6 7103 bp 60.97 5.95 83.29
scnpilot_expt_750_bf_scaffold_1612
Genus: Afipia (66.67%)
6 8728 bp 63.46 6.27 92.25
scnpilot_expt_750_bf_scaffold_5972
Class: Alphaproteobacteria (50%)
6 6989 bp 65.15 5.22 90.10
scnpilot_expt_750_bf_scaffold_3124
Order: Rhizobiales (50%)
6 5345 bp 63.44 5.38 85.59
scnpilot_expt_750_bf_scaffold_2306
Order: Rhizobiales (50%)
6 7388 bp 65.44 6.29 91.41
scnpilot_expt_750_bf_scaffold_4587
Class: Betaproteobacteria (50%)
6 5014 bp 63.76 5.58 81.25
scnpilot_expt_750_bf_scaffold_2822
Genus: Afipia (66.67%)
6 6569 bp 62.95 5.44 84.78
scnpilot_expt_750_bf_scaffold_2827
Species: Bradyrhizobiaceae bacterium SG-6C (50%)
6 5724 bp 64.12 7.08 92.51
scnpilot_expt_750_bf_scaffold_6251
Order: Rhizobiales (83.33%)
6 6880 bp 63.23 5.09 92.09
scnpilot_expt_750_bf_scaffold_11148
Order: Burkholderiales (50%)
6 5399 bp 63.96 6.25 84.68
scnpilot_expt_750_bf_scaffold_5997
Order: Rhizobiales (50%)
6 5312 bp 65.85 5.60 96.69
scnpilot_expt_750_bf_scaffold_3658
Species: Hyphomicrobium nitrativorans (50%)
6 5974 bp 66.14 7.32 95.01
scnpilot_expt_750_bf_scaffold_6772
Species: Hyphomicrobium nitrativorans (50%)
6 5675 bp 67.21 6.04 80.67
scnpilot_expt_750_bf_scaffold_2330
Species: Bradyrhizobiaceae bacterium SG-6C (50%)
6 6597 bp 61.09 6.29 83.39
scnpilot_expt_750_bf_scaffold_3410
Order: Rhizobiales (50%)
6 5032 bp 65.82 6.21 88.83
scnpilot_expt_750_bf_scaffold_9315
Order: Rhizobiales (50%)
6 5380 bp 68.48 6.27 92.84
scnpilot_expt_750_bf_scaffold_9317
Genus: Hyphomicrobium (50%)
6 5995 bp 62.75 7.05 77.96
scnpilot_expt_750_bf_scaffold_4109 6 5941 bp 66.39 5.89 92.76
scnpilot_expt_750_bf_scaffold_7059
Class: Alphaproteobacteria (50%)
6 5289 bp 64.76 5.48 76.69
scnpilot_expt_750_bf_scaffold_9082
Genus: Hyphomicrobium (66.67%)
6 5227 bp 68.07 4.97 81.50
scnpilot_expt_750_bf_scaffold_4390
Order: Rhizobiales (50%)
6 5797 bp 66.07 6.47 82.23
scnpilot_expt_750_bf_scaffold_3446
Species: Afipia broomeae (66.67%)
6 6414 bp 61.85 6.98 86.95
scnpilot_expt_750_bf_scaffold_3191
Phylum: Proteobacteria (50%)
6 6732 bp 60.67 5.76 83.82
scnpilot_expt_750_bf_scaffold_7077
Order: Rhizobiales (66.67%)
6 7215 bp 60.06 5.13 78.59
scnpilot_expt_750_bf_scaffold_4912
Species: Afipia broomeae (50%)
6 8048 bp 65.64 7.08 85.59
scnpilot_expt_750_bf_scaffold_3715
Order: Rhizobiales (50%)
6 8410 bp 64.68 6.30 83.58
scnpilot_expt_750_bf_scaffold_6317
Species: Afipia clevelandensis (66.67%)
6 5330 bp 62.33 6.71 95.85
scnpilot_expt_750_bf_scaffold_1718
Order: Rhizobiales (71.43%)
7 8318 bp 65.88 6.04 89.81
scnpilot_expt_750_bf_scaffold_2654
Species: Hyphomicrobium nitrativorans (57.14%)
7 7192 bp 66.18 6.88 90.93
scnpilot_expt_750_bf_scaffold_2404
Genus: Hyphomicrobium (57.14%)
7 6453 bp 65.92 5.85 85.45
scnpilot_expt_750_bf_scaffold_8415
Class: Alphaproteobacteria (57.14%)
7 5374 bp 57.50 3.40 94.34
scnpilot_expt_750_bf_scaffold_8936
Class: Alphaproteobacteria (57.14%)
7 5638 bp 56.40 4.26 68.96
Displaying items 51-100 of 470 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.