ggKbase home page

scnpilot_expt_750_p_scaffold_479_10

Organism: SCNPILOT_EXPT_750_P_Actinomycetales_72_13

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 14 / 38
Location: 11184..12770

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448 similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 491.0
  • Bit_score: 675
  • Evalue 5.00e-191
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); K03086 RNA polymerase primary sigma factor id=7722053 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 78.6
  • Coverage: 468.0
  • Bit_score: 672
  • Evalue 3.00e-190
sigA; RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 511.0
  • Bit_score: 643
  • Evalue 5.60e-182

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Microbacterium sp. C448 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1587
ATGGCGAGGACGAAGGCGGCGGAGACGGTGGCCGAGCCCCAGACGGCCCCGGCGAAGCGCACCGCGGCGCCGGCGAAGCGCGCCGCGACGGCGGTCGCGGAGAAGCCGAAGGCGGCCGCGACGAGCGCCAAGGCCCCCGCCCCGACGGCGCCGGCCAAGGCGCCCGCGAAGACGGCTCCCGCCGCCGCGAAGGCCGCTCCGGCCGCGAAGGCCGCGTCGGCGGCGAAGACGGCTCCGGCCGCGACGAGGGCGCCCGCCAAGTCGACCGCGGCGAAGCCCGCGACGACGGCGCCCGTCGCGAAGCCGGCGCAGGCGAAGACCGCCGCGGCCAAGGCCCCTGCCGCCAAGGCGCCCGCGAAGACGTCGCCGCGGCGCGGCAAGGCCGCCGAGGCCACCGAGGACGAGGCCGACCTGCCGGTCGAGGAGATCGACGAGGACATCGAGGTCGACGAGGAGGCCGAGGAGACGGACGAGGCGGAGGCCGCCGAGCCCGCCGAGGACGCGGCCGAGCCGGCGGGCGAGGCCGGTCCGGAGACCGACGCCGACGCCGAGGAGGAGGACGAGGAGGGCGAGTCGACCGGCAAGGACGAGGAGCTCCCCACCGGCGCGATCCGGCTGAGCCTCGTCGACGACGAGGACGACGTCCCGCTGCAGTCGACGCAGATCACCGGCGCCACGGCGGACCCGGTCAAGGACTACCTCAAGCAGATCGGCAAGGTCGCGCTGCTGAACGCCGCGGAGGAGGTCGAGCTCGCGATGCGCATCGAGGCCGGCCTGTTCGCCGAGGAGAAGCTCTCGATGATGAAGGCCGACGAGCAGCGCTCCAAGCTCGGCCGCGAGCTCACCATGGTCGCCAAGGACGGCCAGCGGGCGAAGTCGCACCTGCTCGGCGCGAACCTCCGCCTCGTCGTCTCGCTCGCGAAGCGCTACACCGGCCGGGGCATGCAGTTCCTCGACCTCATCCAGGAGGGGAACCTCGGCCTCATCCGCGCCGTCGAGAAGTTCGACTACACCAAGGGCTTCAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATCACCCGCGCGATGGCCGACCAGGCGCGCACCATCCGCATCCCGGTCCACATGGTCGAGGTCATCAACAAGCTCGCCCGCGTGCAGCGCCAGATGCTGCAGGACCTCGGCCGCGAGCCCACCCCCGAGGAGCTCAGCCGCGAGCTCGACATGACGCCGGAGAAGGTCGTCGAGGTGCAGAAGTACGGCCGCGAGCCGATCTCACTGCACACCCCGCTCGGCGAGGACGGCGACAGCGAGTTCGGCGACCTCATCGAGGACACCGAGGCGGTCGTGCCGGCCGACGCGGTCGGCTTCACGATGCTGCAGAAGCAGCTCGAGCAGCTGCTCGACTCGCTCTCCGAGCGCGAGGCCGGCGTCATCCGGATGCGCTTCGGCCTCGGCGACGGCCAGCCGAAGACGCTCGACCAGATCGGCGACACCTTCGGGGTGACCCGCGAGCGGATCCGGCAGATCGAGTCGAAGACGATGGCGAAGCTCCGCCATCCGTCGAGGTCCCAGGCGCTGCGCGACTACCTCGAGTAG
PROTEIN sequence
Length: 529
MARTKAAETVAEPQTAPAKRTAAPAKRAATAVAEKPKAAATSAKAPAPTAPAKAPAKTAPAAAKAAPAAKAASAAKTAPAATRAPAKSTAAKPATTAPVAKPAQAKTAAAKAPAAKAPAKTSPRRGKAAEATEDEADLPVEEIDEDIEVDEEAEETDEAEAAEPAEDAAEPAGEAGPETDADAEEEDEEGESTGKDEELPTGAIRLSLVDDEDDVPLQSTQITGATADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAEEKLSMMKADEQRSKLGRELTMVAKDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELSRELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDTEAVVPADAVGFTMLQKQLEQLLDSLSEREAGVIRMRFGLGDGQPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQALRDYLE*