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scnpilot_solids2_trim150_scaffold_1689

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1689_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1051
DNA (1050bp) protein (350aa)
ATP-dependent RNA helicase RhlB {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011806}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00661, ECO:0000256|SAAS:SAAS00011808};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent RNA helicase RhlB n=2 Tax=Rhodanobacter denitrificans RepID=M4NKJ1_9GAMM
DNA/RNA helicase, superfamily II
scnpilot_solids2_trim150_scaffold_1689_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1191..1868
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZV1_9GAMM
cell division ATP-binding protein FtsE
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EIL92742.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1689_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1865..2845
DNA (981bp) protein (327aa)
Cell division protein FtsX n=1 Tax=Rhodanobacter denitrificans RepID=I4WX89_9GAMM
cell division protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1689_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2962..3777
DNA (816bp) protein (272aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Rhodanobacter denitrificans RepID=I4WX88_9GAMM
response regulator containing a CheY-like receiver domain and a GGDEF domain
Response regulator containing a CheY-like receiver domain and a GGDEF domain {ECO:0000313|EMBL:AGG90594.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1689_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3774..4493
DNA (720bp) protein (240aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WX87_9GAMM
scnpilot_solids2_trim150_scaffold_1689_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4801..5712
DNA (912bp) protein (304aa)
transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035CCC64
Transcriptional regulator {ECO:0000313|EMBL:KGI78134.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
transcriptional regulator; K02529 LacI family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1689_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5983..8547
DNA (2565bp) protein (855aa)
TonB-dependent receptor n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JXA9_STEMA rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor {ECO:0000313|EMBL:AEM51068.1}; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids2_trim150_scaffold_1689_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8563..10575
DNA (2013bp) protein (671aa)
hypothetical protein; K00316 spermidine dehydrogenase [EC:1.5.99.6] rbh
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z619_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59801.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
scnpilot_solids2_trim150_scaffold_1689_9
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10632..11918
DNA (1287bp) protein (429aa)
FucP protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RYV7_XANCB rbh
Strain LMCP11 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28046.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
fucose permease; K02429 MFS transporter, FHS family, L-fucose permease rbh
scnpilot_solids2_trim150_scaffold_1689_10
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11981..12817
DNA (837bp) protein (279aa)
Oxidoreductase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPR9_PSEUP
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AER55609.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids2_trim150_scaffold_1689_11
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12826..13818
DNA (993bp) protein (331aa)
scrK; fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4] rbh
fructokinase n=1 Tax=Xanthomonas sp. M97 RepID=UPI00039DFB93 rbh
Fructokinase {ECO:0000313|EMBL:EWS77262.1}; TaxID=1444770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa PLS229.;"
scnpilot_solids2_trim150_scaffold_1689_12
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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13853..14158
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037B5B28
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EYT60287.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
Antibiotic biosynthesis monooxygenase
scnpilot_solids2_trim150_scaffold_1689_13
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14229..15998
DNA (1770bp) protein (590aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
gamma-glutamyltranspeptidase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00038173F8 rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:AET91095.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
scnpilot_solids2_trim150_scaffold_1689_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16221..16655
DNA (435bp) protein (145aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ24_9GAMM
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
alternative sigma factor RpoH; K03089 RNA polymerase sigma-32 factor
Displaying 14 items

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