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scnpilot_solids2_trim150_scaffold_225

Search features with annotation key words

Displaying items 31-52 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_225_31
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38863..39918)
DNA (1056bp) protein (352aa)
Asparaginase n=1 Tax=Rhodanobacter denitrificans RepID=M4NNS6_9GAMM
asparaginase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_225_32
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40186..41496)
DNA (1311bp) protein (437aa)
dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19]
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036EFB7B
Dipeptidase {ECO:0000313|EMBL:ACG76702.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
scnpilot_solids2_trim150_scaffold_225_33
Rhodococcus sp. YK2, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41677..42336)
DNA (660bp) protein (220aa)
Genes for alpha and beta subunits of terminal dioxygenase component, hypothetical protein, hydrolase, extradiol dioxygenase, hypothetical protein, ferredoxin-like protein, hypothetical protein, partial and complete cds n=1 Tax=Rhodococcus sp. YK2 RepID=Q8L175_9NOCA
Genes for alpha and beta subunits of terminal dioxygenase component, hypothetical protein, hydrolase, extradiol dioxygenase, hypothetical protein, ferredoxin-like protein, hypothetical protein, partial ... {ECO:0000313|EMBL:BAC00809.1}; TaxID=169536 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. YK2.;"
phthalate ester hydrolase (isochorismatase hydrolase)
scnpilot_solids2_trim150_scaffold_225_34
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(42333..43244)
DNA (912bp) protein (304aa)
polysaccharide deacetylase (EC:3.-.-.-) rbh
polysaccharide deacetylase n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003815F0D rbh
Putative Chitin deacetylase 1 {ECO:0000313|EMBL:EPH40230.1}; TaxID=1286094 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
scnpilot_solids2_trim150_scaffold_225_35
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43386..45236
DNA (1851bp) protein (617aa)
Para-aminobenzoate synthase subunit I n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BAM0_9RHIZ
para-aminobenzoate synthase subunit I
Para-aminobenzoate synthase subunit I {ECO:0000313|EMBL:AGK59307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
scnpilot_solids2_trim150_scaffold_225_36
unknown

Not on your lists

comp(45447..45668)
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_225_37
unknown

Not on your lists

46005..46364
DNA (360bp) protein (120aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_225_38
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46375..47151
DNA (777bp) protein (259aa)
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C n=1 Tax=Rhodanobacter denitrificans RepID=I4WS68_9GAMM
pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C {ECO:0000313|EMBL:AGG89395.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_225_39
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47263..49971
DNA (2709bp) protein (903aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VME6_9GAMM
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EIL88387.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_225_40
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50099..51406
DNA (1308bp) protein (436aa)
Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CLV2_XANCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL09145.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
scnpilot_solids2_trim150_scaffold_225_41
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54414..54980)
DNA (567bp) protein (189aa)
CRISPR-associated Csy4 family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH5_9GAMM
CRISPR-associated Csy4 family protein {ECO:0000313|EMBL:EIL89116.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated Csy4 family protein
scnpilot_solids2_trim150_scaffold_225_42
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54985..56025)
DNA (1041bp) protein (347aa)
Crispr-associated protein, Csy3 family n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH4_9GAMM rbh
Crispr-associated protein, Csy3 family {ECO:0000313|EMBL:EIL89115.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated protein Csy3 family rbh
scnpilot_solids2_trim150_scaffold_225_43
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56043..57017)
DNA (975bp) protein (325aa)
CRISPR-associated protein Csy2 family n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPH3_9GAMM rbh
CRISPR-associated protein Csy2 family {ECO:0000313|EMBL:EIL89114.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
csy; crispr-associated protein, Csy2 family rbh
scnpilot_solids2_trim150_scaffold_225_44
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57014..58387)
DNA (1374bp) protein (458aa)
Crispr-associated protein, Csy1 family n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FY41_9XANT
Crispr-associated protein, Csy1 family {ECO:0000313|EMBL:ENZ96952.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
CRISPR-associated protein Csy1 family
scnpilot_solids2_trim150_scaffold_225_45

Not on your lists

58697..58966
DNA (270bp) protein (90aa)
Plasmid stability protein n=2 Tax=mine drainage metagenome RepID=T1AFA1_9ZZZZ
Plasmid stability protein {ECO:0000313|EMBL:EQD59166.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_225_46
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58963..59379
DNA (417bp) protein (139aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
Ribonuclease VapC n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WKD3_DELAC
PilT protein-like protein; K07062
scnpilot_solids2_trim150_scaffold_225_47
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59389..62832)
DNA (3444bp) protein (1148aa)
CRISPR-associated helicase Cas3 family n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0FIJ2_9XANT rbh
CRISPR-associated helicase Cas3 family {ECO:0000313|EMBL:ENZ96953.1}; TaxID=1131451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
crispr-associated helicase Cas3; K07012 rbh
scnpilot_solids2_trim150_scaffold_225_48
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62829..63815)
DNA (987bp) protein (329aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodanobacter sp. 115 RepID=I4VPG8_9GAMM rbh
cas; crispr-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
scnpilot_solids2_trim150_scaffold_225_trna_1
unknown

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comp(63955..64028)
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_225_49
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64322..66220)
DNA (1899bp) protein (633aa)
Glycyl aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBP2_9GAMM
Glycyl aminopeptidase {ECO:0000313|EMBL:EIL96883.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glycyl aminopeptidase
scnpilot_solids2_trim150_scaffold_225_50
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66436..67587
DNA (1152bp) protein (384aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NT70_9GAMM
diguanylate cyclase (GGDEF) domain-containing protein
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG90686.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_225_51
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67646..69190)
DNA (1545bp) protein (515aa)
Amino acid transporter n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQT4_9GAMM
Amino acid permease {ECO:0000313|EMBL:KGI76799.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
amino acid transporter
Displaying items 31-52 of 52 in total

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