ggKbase home page

scnpilot_solids2_trim150_scaffold_458

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_458_1
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162..971)
DNA (810bp) protein (270aa)
Uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JF82_NITOC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA56514.1}; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
scnpilot_solids2_trim150_scaffold_458_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(1097..2125)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DI93_SINAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGA28972.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_458_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2122..2607)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK06_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28971.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_458_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3042..4124
DNA (1083bp) protein (361aa)
Uncharacterized protein {ECO:0000313|EMBL:AHK02725.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
scnpilot_solids2_trim150_scaffold_458_5
unknown

Not on your lists

comp(4163..4438)
DNA (276bp) protein (92aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_6
unknown

Not on your lists

comp(4442..4570)
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_7
unknown

Not on your lists

comp(4567..5229)
DNA (663bp) protein (221aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_8

Not on your lists

comp(5241..5585)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Sulfitobacter phage pCB2047-B RepID=M4PQN8_9VIRU
Uncharacterized protein {ECO:0000313|EMBL:KKN70086.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_458_9

Not on your lists

comp(5678..5965)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DTI6_SINAD
Marine sediment metagenome DNA, contig: S06H3_S14317 {ECO:0000313|EMBL:GAI38151.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_458_10
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6200..6685)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQJ8_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP73523.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
scnpilot_solids2_trim150_scaffold_458_11
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6690..7733)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNH2_METPP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM97111.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
scnpilot_solids2_trim150_scaffold_458_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7723..8586)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8S8_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI99010.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids2_trim150_scaffold_458_13
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8583..8786)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WSR0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN15715.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
scnpilot_solids2_trim150_scaffold_458_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8783..10087)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E1529F
ATPase {ECO:0000313|EMBL:CCW17312.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_458_15
unknown

Not on your lists

comp(10084..10272)
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(10318..12168)
DNA (1851bp) protein (617aa)
Putative transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRR3_SINAD rbh
transcriptional regulator rbh
Putative transcriptional regulator {ECO:0000313|EMBL:AGA31685.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_458_17
unknown

Not on your lists

comp(12315..13043)
DNA (729bp) protein (243aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_18
unknown

Not on your lists

comp(13114..13332)
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_19
unknown

Not on your lists

comp(13575..14705)
DNA (1131bp) protein (377aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_20
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14965..15492
DNA (528bp) protein (176aa)
Sigma-24 n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PD88_9DELT
ECF subfamily RNA polymerase sigma-24 subunit
Tax=GWF2_Verrucomicrobia_62_7_curated
scnpilot_solids2_trim150_scaffold_458_21
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15651..16490
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DFFE63
ParBc, ParB-like nuclease domain {ECO:0000313|EMBL:EAQ78967.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family
scnpilot_solids2_trim150_scaffold_458_22
unknown

Not on your lists

17017..17196
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_23
unknown

Not on your lists

17362..17571
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_24
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17564..18475
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000311E64D
type IV secretory pathway, VirD4 component
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:AGA31694.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_458_25
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

18472..19149
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000311E64D
type IV secretory pathway, VirD4 component
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:AGA31694.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
scnpilot_solids2_trim150_scaffold_458_26
unknown

Not on your lists

19153..19470
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_27
unknown

Not on your lists

19655..19864
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F16792
scnpilot_solids2_trim150_scaffold_458_28
unknown

Not on your lists

19885..20256
DNA (372bp) protein (124aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_458_29
unknown

Not on your lists

20273..20794
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F09D89
scnpilot_solids2_trim150_scaffold_458_30
unknown

Not on your lists

20889..21074
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying items 1-30 of 49 in total

View Taxonomy