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scnpilot_solids2_trim150_scaffold_119

Search features with annotation key words

Displaying items 61-90 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_119_60
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(56930..58252)
-----------------
DNA (1323bp)
protein (441aa)
membrane protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E474B9 rbh
Magnesium and cobalt efflux protein CorC {ECO:0000313|EMBL:KJL18285.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hemolysins rbh
scnpilot_solids2_trim150_scaffold_119_61
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(58538..59428)
-----------------
DNA (891bp)
protein (297aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B739DA
Uncharacterized protein {ECO:0000313|EMBL:KJL27229.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_119_62
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(59899..61359)
-----------------
DNA (1461bp)
protein (487aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:KJL30985.1}; EC=1.1.1.205 {ECO:0000313|EMBL:KJL30985.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
Inosine 5'-monophosphate dehydrogenase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KHM2_9MICO rbh
scnpilot_solids2_trim150_scaffold_119_63
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

61520..65194
-----------------
DNA (3675bp)
protein (1225aa)
Alpha-ketoglutarate decarboxylase {ECO:0000313|EMBL:EYT59653.1}; EC=4.1.1.71 {ECO:0000313|EMBL:EYT59653.1};; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
kgd; 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] rbh
alpha-ketoglutarate decarboxylase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037FD097 rbh
scnpilot_solids2_trim150_scaffold_119_64
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(65258..66559)
-----------------
DNA (1302bp)
protein (434aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000311239A rbh
Enhanced intracellular survival protein {ECO:0000313|EMBL:KJQ55879.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
acetyltransferase rbh
scnpilot_solids2_trim150_scaffold_119_65
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66599..66844)
-----------------
DNA (246bp)
protein (82aa)
alpha-ketoglutarate decarboxylase n=1 Tax=Microbacterium barkeri RepID=UPI0003187560
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88349.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
transmembrane transcriptional regulator
scnpilot_solids2_trim150_scaffold_119_66
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66841..67506)
-----------------
DNA (666bp)
protein (222aa)
RNA polymerase sigma factor RpoE n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003487A57
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EYT59656.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_119_67
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

67555..68880
-----------------
DNA (1326bp)
protein (442aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
5-enolpyruvylshikimate-3-phosphate synthase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036D5D15 rbh
scnpilot_solids2_trim150_scaffold_119_68
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

68877..69920
-----------------
DNA (1044bp)
protein (348aa)
GTPase; K06949 ribosome biogenesis GTPase [EC:3.6.1.-] rbh
ribosome small subunit-dependent GTPase A n=1 Tax=Microbacterium barkeri RepID=UPI0002F21671 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids2_trim150_scaffold_119_69
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

69930..70406
-----------------
DNA (477bp)
protein (159aa)
bcp; peroxiredoxin; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
peroxiredoxin n=1 Tax=Microbacterium barkeri RepID=UPI0002F9D93C
Peroxiredoxin {ECO:0000313|EMBL:KDA06653.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_solids2_trim150_scaffold_119_70
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(70413..70841)
-----------------
DNA (429bp)
protein (143aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000312109A
Histidine kinase {ECO:0000313|EMBL:KDA06652.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
signal transduction histidine kinase
scnpilot_solids2_trim150_scaffold_119_71
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

71057..71305
-----------------
DNA (249bp)
protein (83aa)
transcription factor WhiB n=1 Tax=Microbacterium yannicii RepID=UPI0002DC4CB7
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
regulatory protein
scnpilot_solids2_trim150_scaffold_119_72
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(71395..72480)
-----------------
DNA (1086bp)
protein (362aa)
TOBE domain protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6WTI5_PROPF rbh
TOBE domain-containing protein rbh
TOBE domain protein {ECO:0000313|EMBL:AFN46501.1}; TaxID=767029 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
scnpilot_solids2_trim150_scaffold_119_73
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(72483..73376)
-----------------
DNA (894bp)
protein (298aa)
ABC transporter, permease protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6Y0M4_PROPF rbh
ABC transporter permease rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AFN47127.1}; TaxID=767029 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
scnpilot_solids2_trim150_scaffold_119_74
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(73369..74292)
-----------------
DNA (924bp)
protein (308aa)
ABC transporter, permease protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6Y6F0_PROPF rbh
ABC transporter permease rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AFN47745.1}; TaxID=767029 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
scnpilot_solids2_trim150_scaffold_119_75
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(74305..75627)
-----------------
DNA (1323bp)
protein (441aa)
ABC transporter, solute-binding protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6XLL8_PROPF rbh
ABC transporter substrate-binding protein rbh
ABC transporter, solute-binding protein {ECO:0000313|EMBL:AFN44948.1}; TaxID=767029 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
scnpilot_solids2_trim150_scaffold_119_76
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(75662..76666)
-----------------
DNA (1005bp)
protein (335aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6Y1F3_PROPF
oxidoreductase, NAD-binding domain protein
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:AFN47462.1}; TaxID=767029 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
scnpilot_solids2_trim150_scaffold_119_77
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

76830..78047
-----------------
DNA (1218bp)
protein (406aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A8D6D rbh
ROK family protein {ECO:0000313|EMBL:EMF57049.1}; TaxID=1054862 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
XylR-type repressor rbh
scnpilot_solids2_trim150_scaffold_119_78
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(78067..79539)
-----------------
DNA (1473bp)
protein (491aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
ATPase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KHL3_9MICO rbh
signal transduction histidine kinase rbh
scnpilot_solids2_trim150_scaffold_119_79
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(79590..79982)
-----------------
DNA (393bp)
protein (131aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036F87F8
Uncharacterized protein {ECO:0000313|EMBL:KJQ55870.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
3-hydroxyacyl-CoA dehydrogenase
scnpilot_solids2_trim150_scaffold_119_80
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

80092..80745
-----------------
DNA (654bp)
protein (218aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIE7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KDA06649.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_119_81
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(80803..81081)
-----------------
DNA (279bp)
protein (93aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003458528
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88358.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_119_82
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

81179..81793
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KMK6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJQ55867.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_119_83
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

81790..82986
-----------------
DNA (1197bp)
protein (399aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00037C32FF
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:KJQ55866.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_119_84
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(82934..84157)
-----------------
DNA (1224bp)
protein (408aa)
Glutamate-pyruvate aminotransferase AlaA {ECO:0000313|EMBL:KJQ55865.1}; EC=2.6.1.2 {ECO:0000313|EMBL:KJQ55865.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
class I and II aminotransferase; K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] rbh
aminotransferase AlaT n=1 Tax=Microbacterium barkeri RepID=UPI0002F1FD6E rbh
scnpilot_solids2_trim150_scaffold_119_85
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84188..84835)
-----------------
DNA (648bp)
protein (216aa)
transcriptional regulator n=1 Tax=Nocardiopsis alba RepID=UPI00034BE7B1
HTH-type transcriptional regulator LutR {ECO:0000313|EMBL:KJL27248.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
bacterial regulatory s, gntR family protein
scnpilot_solids2_trim150_scaffold_119_86
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(84942..87701)
-----------------
DNA (2760bp)
protein (920aa)
preprotein translocase subunit SecA n=1 Tax=Microbacterium barkeri RepID=UPI000379544C rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA rbh
scnpilot_solids2_trim150_scaffold_119_87
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

87913..88506
-----------------
DNA (594bp)
protein (198aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI000381F632 rbh
Transcriptional regulator {ECO:0000313|EMBL:KHK98896.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
putative PadR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_119_88
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

88503..89222
-----------------
DNA (720bp)
protein (240aa)
ABC transporter n=1 Tax=Microbacterium sp. 11MF RepID=UPI00036BBE21 rbh
Macrolide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHK98897.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_119_89
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89219..91912
-----------------
DNA (2694bp)
protein (898aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI0003817FB1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK98898.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
hypothetical protein
Displaying items 61-90 of 106 in total

View Taxonomy