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scnpilot_solids2_trim150_scaffold_1067_7

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241

near complete RP 48 / 55 MC: 3 BSCG 47 / 51 MC: 1 ASCG 13 / 38
Location: comp(7091..7624)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-subfamily sigma factor n=1 Tax=Patulibacter medicamentivorans RepID=H0E9S6_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 43.9
  • Coverage: 139.0
  • Bit_score: 111
  • Evalue 1.20e-21
Putative RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:AIY18993.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.7
  • Coverage: 136.0
  • Bit_score: 117
  • Evalue 2.30e-23
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 44.4
  • Coverage: 135.0
  • Bit_score: 100
  • Evalue 5.00e-19

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Taxonomy

Pimelobacter simplex → Pimelobacter → Propionibacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 534
GTGGCGCCGCGAGCCCAGCGCCGCTGCCATGAAGGCCGGCCCGGTTGTGGTTGTCACGATCCGGCTCATGCCGGACATAAACAGGGTATGGAGGCCATGGGCGAGCGGGAGCGTTTCACAGCGTTGTACGCCGCGCACGTCACGGCGGTTCTGGGGTTCGTCGCGCGTCGCTGCGACACGCCTGTCGATGCCGCCGATGTGACGGCCGACGTGTTTGTGGTGGCCTGGCGGCGCATCGCGGTCATACCTGCCGGCGACGGGGCACGATTGTGGCTCTACGGGGTGGCGCGTCACGCGTTGGCGAATCAGCATCGAGGCGAGACGCGTCGCGGCCGCCTCGGGCAGGCGTTGCTCGACGCGTGGACTGGGGCGTCGGCACCGGACCCGGCCGAATTGTTCGCTGTGCGTGAACAGGCCGTCGCCGCCCGCATTTCCCGGGCCCGCAGGGGGATCCGCCGGCTCCTCGGGGAGTCGGAAAAACCTGCACTGCAAGTCATCTCACAATCTTCGATCGCATTAGAGGCACAATCATGA
PROTEIN sequence
Length: 178
VAPRAQRRCHEGRPGCGCHDPAHAGHKQGMEAMGERERFTALYAAHVTAVLGFVARRCDTPVDAADVTADVFVVAWRRIAVIPAGDGARLWLYGVARHALANQHRGETRRGRLGQALLDAWTGASAPDPAELFAVREQAVAARISRARRGIRRLLGESEKPALQVISQSSIALEAQS*