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scnpilot_solids2_trim150_scaffold_70_5

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: 3834..4421

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigD n=1 Tax=Saccharopolyspora spinosa RepID=UPI000237A5A6 similarity UNIREF
DB: UNIREF100
  • Identity: 60.8
  • Coverage: 186.0
  • Bit_score: 220
  • Evalue 1.20e-54
RNA polymerase sigma factor SigD {ECO:0000313|EMBL:KEI45135.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.2
  • Coverage: 186.0
  • Bit_score: 220
  • Evalue 1.60e-54
putative RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 60.8
  • Coverage: 186.0
  • Bit_score: 218
  • Evalue 1.40e-54

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Taxonomy

Saccharopolyspora rectivirgula → Saccharopolyspora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 588
ATGGACCTGTCGGATGACGAGATCGACGTCGTGGTGGACCGGGCGGTCACCGGCGACAGGTCCGCATTGGCCGAGTTGCTCAGGCGGATTCACCCGATGGTCGTGCGCTACTGTCGCGCGCGGATGTCGGCCTCCCACCGATCACTGTCCTCCGCCGACGACATAGCGCAGGAGGTGTGCATGGCCGTGATGACCGCTCTGCCCACCTACGCGCGTGATGGCCGACCCTTCCTGGCCTTCGTTTACGGCATTGCCTCGCACAAGGTGGCCGACGCCCACCGGTCGGCGGCGCGCTCGCGTTCGCACCCGATGGCCGACGTCCCGGATGGTGTCAGCGACGAGGTCGACCCCGAGGACCTCGCCGTCCAGGGTTCGGTCGGTCGCACCATCGCGGGCCTGCTGTCCGAGTTGCCCCCACTCCAGCGGGAGATCCTCATCCTCCGGGTGGCCAGCGGCCTGTCCGCCGAGGAAGCCGCCGACACTCTGGGCACGACGGCCGGCGCCGTCCGGGTCGCCCAGCATCGCGCCCTGGGCAAGTTGCGCGCGCTGGTCACCGCCGACGCCGAGCTGGTGGAGCTGCTGACCTGA
PROTEIN sequence
Length: 196
MDLSDDEIDVVVDRAVTGDRSALAELLRRIHPMVVRYCRARMSASHRSLSSADDIAQEVCMAVMTALPTYARDGRPFLAFVYGIASHKVADAHRSAARSRSHPMADVPDGVSDEVDPEDLAVQGSVGRTIAGLLSELPPLQREILILRVASGLSAEEAADTLGTTAGAVRVAQHRALGKLRALVTADAELVELLT*