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scnpilot_solids2_trim150_scaffold_378_2

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: 1405..1917

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LNS4_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 37.3
  • Coverage: 158.0
  • Bit_score: 97
  • Evalue 1.70e-17
RNA polymerase sigma-70 factor, sigma-E family {ECO:0000313|EMBL:KJE23048.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.8
  • Coverage: 157.0
  • Bit_score: 99
  • Evalue 6.30e-18
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 37.3
  • Coverage: 158.0
  • Bit_score: 97
  • Evalue 5.40e-18

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGACGTTCGAGGAGTTCCTCGGCGGGTCGTTCGAGCGGTTGGCCGGCTACGCGCGGTTGCTGGCCGGGAACCGGACCGAGGGCGATGACCTGCTGGCCGAGGCACTCCTCGTCGCGCAACGACGCTGGCCGGACATCGCCGTCATGGAATACCCCGTGGCTTACGTGCGTACCATCATCACCTCTAGGCATCTGAAACGACGGCGTTCCTGGTTTGCCCGGAACGTGACCACCCATTCTCCGGAAACGCTGCCGGAACCATCGGACAGCCATGGCGGCCAGCTGAATGAGGTTGCCCGGATCGACGATCAGCACCAGATCGCCACCCTGTTGGCGGGTCTGCCGCCACGGCAACGGACTGCGGTGGTGATGCGCTACTTCCTCGACCTGTCCTACGACCAGATCGCGACGGAACTCGGCGCCACGCCCACCGCGGCCAAGACCTTGGTCTCTCGGGGACTGGCTGGGATGCGGATAGTCGGTGCGGCCGAAAACTTCCAGGAGACACGATGA
PROTEIN sequence
Length: 171
MTFEEFLGGSFERLAGYARLLAGNRTEGDDLLAEALLVAQRRWPDIAVMEYPVAYVRTIITSRHLKRRRSWFARNVTTHSPETLPEPSDSHGGQLNEVARIDDQHQIATLLAGLPPRQRTAVVMRYFLDLSYDQIATELGATPTAAKTLVSRGLAGMRIVGAAENFQETR*