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scnpilot_solids2_trim150_scaffold_693_20

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: comp(19634..20305)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Amycolatopsis methanolica RepID=UPI0003753229 similarity UNIREF
DB: UNIREF100
  • Identity: 66.1
  • Coverage: 221.0
  • Bit_score: 274
  • Evalue 1.00e-70
RNA polymerase sigma-W factor {ECO:0000313|EMBL:AIJ27151.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.1
  • Coverage: 213.0
  • Bit_score: 274
  • Evalue 1.40e-70
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.5
  • Coverage: 185.0
  • Bit_score: 273
  • Evalue 5.50e-71

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Taxonomy

Amycolatopsis methanolica → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 672
GTGCGGGGAGAGCAGGAGTCACGGTCGGACGCCGACCTGCTGGCCGCCCACGCCTCCGGCGACGCACACGCGTTCGGCGCCCTGCTGGCCCGACACCGGGACCGCATGTGGGCGGTAGCCCTGCGCACCATGCGCGACCCGGAGGACGCGGCCGACGCCCTGCAGGACGCGTGCATCTCGGCATTCCGGGCCGCGGCATCCTTCCGGGCCGAGTCTGCCGTCACCACCTGGCTGCATCGGATCGTGGTGAACGCCTGCCTGGACCGGATGCGCCGGCGCAAGGCCCGGCCCACCGTTCCGCTGGACGACCAGGGACCCGCCGAGCCGGCGGTGCCCCGAGACGCGATGGCCGACCGGGAGTTGACGCTGGACATCAGCGCGGCGCTGGGCACGCTGCCCGACGATCAGCGCCTGGCGATCGTGCTGGTGGATGTGCAGGGGTACTCGGTGGCCGATGCCGCCGGCGCGCTCGGCGTGGCCGAAGGCACCATCAAGAGTCGCTGCGCGCGCGGCCGGGCCAAGCTTGCGATACAACTCGGACACTTGCGGAACCGACCGAGCCCGGGCGCCGTCGAAGGTGAACGAGCCCCGCTGGGCTCGGCGTCGGCGGACGGGGGGTCGGCGCCGAGCCGGGGGCCGGCGGCACAGCGTCTTGCGGAAGGAGGAGGCTGA
PROTEIN sequence
Length: 224
VRGEQESRSDADLLAAHASGDAHAFGALLARHRDRMWAVALRTMRDPEDAADALQDACISAFRAAASFRAESAVTTWLHRIVVNACLDRMRRRKARPTVPLDDQGPAEPAVPRDAMADRELTLDISAALGTLPDDQRLAIVLVDVQGYSVADAAGALGVAEGTIKSRCARGRAKLAIQLGHLRNRPSPGAVEGERAPLGSASADGGSAPSRGPAAQRLAEGGG*