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SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_42_19

In projects: SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK

Properties

Avg. coverage: 19.24 Longest contig: 223.87 Kbp Bin length: 5.33 Mbp GC content: 42.32 %
Contigs count: 116 Features count: 4552 rRNAs count: 1 tRNAs count: 38

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Displaying items 1-50 of 116 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_25
Order: Sphingobacteriales (60.56%)
180 223870 bp 42.45 16.60 88.59
scnpilot_solids2_trim150_scaffold_55
Order: Sphingobacteriales (56.57%)
177 223124 bp 42.83 18.58 90.25
scnpilot_solids2_trim150_scaffold_88
Order: Sphingobacteriales (62.71%)
177 223436 bp 43.72 19.07 89.73
scnpilot_solids2_trim150_scaffold_37
Order: Sphingobacteriales (76.07%)
165 206896 bp 42.41 15.30 89.07
scnpilot_solids2_trim150_scaffold_68
Order: Sphingobacteriales (67.33%)
155 154502 bp 42.12 15.78 89.11
scnpilot_solids2_trim150_scaffold_31
Order: Sphingobacteriales (56.21%)
153 206012 bp 42.50 15.32 89.56
scnpilot_solids2_trim150_scaffold_54
Phylum: Bacteroidetes (88.89%)
126 161882 bp 43.04 19.07 88.63
scnpilot_solids2_trim150_scaffold_114
Order: Sphingobacteriales (69.75%)
120 123571 bp 43.41 21.99 87.47
scnpilot_solids2_trim150_scaffold_94
Order: Sphingobacteriales (65.45%)
110 126488 bp 42.53 11.99 91.16
scnpilot_solids2_trim150_scaffold_144
Order: Sphingobacteriales (54.9%)
103 101858 bp 42.17 19.27 86.64
scnpilot_solids2_trim150_scaffold_199
Phylum: Bacteroidetes (67.33%)
101 116044 bp 42.53 20.27 88.01
scnpilot_solids2_trim150_scaffold_106
Order: Sphingobacteriales (50.53%)
95 116307 bp 39.33 30.17 89.28
scnpilot_solids2_trim150_scaffold_173
Order: Sphingobacteriales (52.44%)
82 87877 bp 43.94 17.68 89.50
scnpilot_solids2_trim150_scaffold_150
Order: Sphingobacteriales (58.02%)
81 115277 bp 42.15 17.74 90.60
scnpilot_solids2_trim150_scaffold_153
Order: Sphingobacteriales (58.23%)
81 97371 bp 42.75 19.11 88.45
scnpilot_solids2_trim150_scaffold_240
Order: Sphingobacteriales (50%)
78 97542 bp 42.08 19.83 91.58
scnpilot_solids2_trim150_scaffold_196
Order: Sphingobacteriales (60.27%)
73 80361 bp 42.17 17.70 87.97
scnpilot_solids2_trim150_scaffold_178
Order: Sphingobacteriales (81.69%)
72 84383 bp 42.33 15.71 89.97
scnpilot_solids2_trim150_scaffold_215
Order: Sphingobacteriales (59.72%)
72 71604 bp 42.54 18.89 86.73
scnpilot_solids2_trim150_scaffold_204
Order: Sphingobacteriales (65.22%)
70 77722 bp 41.93 16.46 90.93
scnpilot_solids2_trim150_scaffold_195
Order: Sphingobacteriales (86.76%)
68 80609 bp 41.34 13.64 88.23
scnpilot_solids2_trim150_scaffold_177
Order: Sphingobacteriales (64.18%)
67 86123 bp 43.26 23.87 86.91
scnpilot_solids2_trim150_scaffold_218
Order: Sphingobacteriales (72.31%)
65 70819 bp 42.58 20.78 85.48
scnpilot_solids2_trim150_scaffold_183
Order: Sphingobacteriales (60.34%)
59 84005 bp 43.02 22.36 87.22
scnpilot_solids2_trim150_scaffold_254
Order: Sphingobacteriales (81.03%)
59 62061 bp 41.35 17.54 90.99
scnpilot_solids2_trim150_scaffold_261
Phylum: Bacteroidetes (65.52%)
59 61642 bp 40.91 23.20 91.63
scnpilot_solids2_trim150_scaffold_374
Phylum: Bacteroidetes (60.71%)
57 53966 bp 40.34 29.00 89.40
scnpilot_solids2_trim150_scaffold_255
Phylum: Bacteroidetes (80.36%)
57 61823 bp 41.51 26.63 92.37
scnpilot_solids2_trim150_scaffold_233
Phylum: Bacteroidetes (90.91%)
55 66615 bp 43.19 20.69 86.08
scnpilot_solids2_trim150_scaffold_280
Phylum: Bacteroidetes (81.48%)
54 57906 bp 43.09 15.82 90.68
scnpilot_solids2_trim150_scaffold_281
Phylum: Bacteroidetes (68.52%)
54 57836 bp 39.92 24.28 80.71
scnpilot_solids2_trim150_scaffold_354
Order: Sphingobacteriales (54.72%)
54 65179 bp 42.20 16.61 85.60
scnpilot_solids2_trim150_scaffold_505
Order: Sphingobacteriales (74%)
53 63530 bp 41.40 17.53 89.89
scnpilot_solids2_trim150_scaffold_246
Phylum: Bacteroidetes (55.77%)
52 64013 bp 43.86 23.36 85.60
scnpilot_solids2_trim150_scaffold_235
Order: Sphingobacteriales (68%)
50 66225 bp 43.11 23.14 88.87
scnpilot_solids2_trim150_scaffold_301
Order: Sphingobacteriales (66%)
50 53339 bp 43.21 21.85 88.96
scnpilot_solids2_trim150_scaffold_356
Phylum: Bacteroidetes (78.72%)
47 47886 bp 41.03 26.41 85.18
scnpilot_solids2_trim150_scaffold_353
Order: Sphingobacteriales (67.39%)
46 48195 bp 40.56 16.13 84.27
scnpilot_solids2_trim150_scaffold_355
Order: Sphingobacteriales (59.09%)
44 58748 bp 42.64 20.19 92.18
scnpilot_solids2_trim150_scaffold_328
Phylum: Bacteroidetes (79.07%)
43 50348 bp 42.53 20.81 86.50
scnpilot_solids2_trim150_scaffold_411
Order: Sphingobacteriales (57.89%)
39 42436 bp 39.98 18.95 85.19
scnpilot_solids2_trim150_scaffold_467
Order: Sphingobacteriales (71.43%)
38 38792 bp 42.03 15.27 86.55
scnpilot_solids2_trim150_scaffold_389
Order: Sphingobacteriales (72.22%)
36 44608 bp 42.32 17.46 90.70
scnpilot_solids2_trim150_scaffold_906
Phylum: Bacteroidetes (69.44%)
36 38976 bp 40.34 25.60 87.28
scnpilot_solids2_trim150_scaffold_733
Phylum: Bacteroidetes (71.43%)
36 51601 bp 42.50 22.82 84.52
scnpilot_solids2_trim150_scaffold_305
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 17.20 89.59
scnpilot_solids2_trim150_scaffold_472
Order: Sphingobacteriales (62.86%)
35 38477 bp 43.21 19.22 89.09
scnpilot_solids2_trim150_scaffold_529
Order: Sphingobacteriales (75.76%)
33 35185 bp 41.91 20.10 84.73
scnpilot_solids2_trim150_scaffold_547
Phylum: Bacteroidetes (68.75%)
32 34664 bp 44.74 18.52 86.38
scnpilot_solids2_trim150_scaffold_610
Phylum: Bacteroidetes (83.33%)
31 30951 bp 42.12 24.34 88.94
Displaying items 1-50 of 116 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.