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scnpilot_solids2_trim150_scaffold_14_12

Organism: SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: comp(10169..10417)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWE4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 82.0
  • Bit_score: 154
  • Evalue 4.40e-35
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 82.0
  • Bit_score: 154
  • Evalue 6.10e-35
RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 96.2
  • Coverage: 78.0
  • Bit_score: 153
  • Evalue 4.00e-35

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Taxonomy

Mesorhizobium alhagi → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCGGAACGAACCCAAAATCTGCAGGACCTTTTCCTCAATTCCGTAAGAAAGAACAAGAACCCGCTTACGATATTCCTGATCAATGGCGTGAAATTGACGGGCGTGGTGACGTCGTTCGACAATTTCTGTGTGCTGTTGCGGCGCGATGGCCATTCCCAGCTTGTCTACAAGCACGCCATCTCGACGATCATGCCCAGCCAGCCGGTCCAGATGTTCGACAGCGAGGAGAGCGCTCGGGAAGCCTGA
PROTEIN sequence
Length: 83
MAERTQNLQDLFLNSVRKNKNPLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPSQPVQMFDSEESAREA*