ggKbase home page

scnpilot_solids2_trim150_scaffold_796_25

Organism: SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_151

partial RP 30 / 55 MC: 3 BSCG 33 / 51 MC: 5 ASCG 8 / 38 MC: 1
Location: comp(22044..22772)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA n=1 Tax=Rhodanobacter denitrificans RepID=I4WYY5_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 242.0
  • Bit_score: 430
  • Evalue 9.20e-118
  • rbh
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG similarity KEGG
DB: KEGG
  • Identity: 90.1
  • Coverage: 242.0
  • Bit_score: 430
  • Evalue 2.90e-118
  • rbh
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.1
  • Coverage: 242.0
  • Bit_score: 430
  • Evalue 1.30e-117

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 729
ATGAGTGTGGCTTCGGAGTATCTGCAGGTTTCCCGCGAAAGTGCCGACGAACTGGTACGCCGGCATGCACCGTTGGTGCGGCGGATCGCCTATCACCTGATGGGGCGGTTGCCGGCCAGCGTGGACGTGGGCGACCTGATCCAGTCGGGAATGATCGGTTTGCTGGAAGCGTCGCGCAATTTCGCCCAGAACCGCGGGGCGAGCTTCGAAACGTATGCGGGCATCCGCATCCGTGGCGCGATGCTGGACGAGCTGCGACGCACCGACTGGGCGCCGCGCTCGGTCCATCGCAAGACCCGCGAGGTGGCGGAGGTGATCCGCCAGATCGAGGTCGAGACGGGTGCGGAGGCGGACGAGAAGGAGGTGATGCGGCGGCTGGGCATCAGCGCCGAGGAATACCACCAGGTGCTGGCCGATGCCGCCTGCGTGCGGCTGCTCAGCCTCACCGGGTCGGACGACGGCGACGAGGGCGGCGTGATGGACGTGGCCGACGAGGGCAGCCTCGGGCCGTCGGAGAACATCGAGCGCGAGGGCATGCGCGAGGACCTGGCCGAGGCGATCAGCGGCCTGCCCGAACGCGAGCAGCTGGTGATGTCGCTGTACTACGAACAGGAGTTGAACCTGAAGGAGATCGGCGCGGTGCTCGGCGTGAGCGAGTCGCGCGTCTGCCAGATCCACGGGCAGGCGGTGCTCCGGTTGCGCGCACGACTTTCCGGCTGGCGCGGCTGA
PROTEIN sequence
Length: 243
MSVASEYLQVSRESADELVRRHAPLVRRIAYHLMGRLPASVDVGDLIQSGMIGLLEASRNFAQNRGASFETYAGIRIRGAMLDELRRTDWAPRSVHRKTREVAEVIRQIEVETGAEADEKEVMRRLGISAEEYHQVLADAACVRLLSLTGSDDGDEGGVMDVADEGSLGPSENIEREGMREDLAEAISGLPEREQLVMSLYYEQELNLKEIGAVLGVSESRVCQIHGQAVLRLRARLSGWRG*