ggKbase home page

scnpilot_solids2_trim150_scaffold_498

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_498_1
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..205
DNA (204bp) protein (68aa)
Cointegrate resolution protein T n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX5_9GAMM
Plasmid replication region DNA-binding N-term
Cointegrate resolution protein T {ECO:0000313|EMBL:EIL86816.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_498_2
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143..601)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037AF002
Uncharacterized protein {ECO:0000313|EMBL:CEH61383.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
scnpilot_solids2_trim150_scaffold_498_3
unknown

Not on your lists

comp(605..790)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037C4763
scnpilot_solids2_trim150_scaffold_498_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1410..1697
DNA (288bp) protein (96aa)
Copper chaperone n=1 Tax=Rhodanobacter denitrificans RepID=M4NFM6_9GAMM
copper chaperone
Copper chaperone {ECO:0000313|EMBL:AGG88857.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_498_5
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2091..3158)
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034946FE rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN42955.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
cnrT; transporter of the DMT superfamily
scnpilot_solids2_trim150_scaffold_498_6
unknown

Not on your lists

comp(3165..3401)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00035F7F55
scnpilot_solids2_trim150_scaffold_498_7
unknown

Not on your lists

comp(3539..3733)
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_8
Xanthomonas alfalfae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4004..4693
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003473575
Integrase
Integrase {ECO:0000313|EMBL:AEO42409.1}; TaxID=981368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. citrumelo F1.;"
scnpilot_solids2_trim150_scaffold_498_9
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4725..7772
DNA (3048bp) protein (1016aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C378B rbh
Transposase {ECO:0000313|EMBL:KGM53249.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
Tn5044 transposase
scnpilot_solids2_trim150_scaffold_498_10
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8131..8892
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA07 RepID=V8EEM2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:ETD50295.1}; TaxID=1431713 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA07.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_498_11
Burkholderia vietnamiensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8964..9239
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JU14_BURVG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABO59767.1}; TaxID=269482 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia; cepacia (strain R1808)).;"
scnpilot_solids2_trim150_scaffold_498_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9239..9676
DNA (438bp) protein (146aa)
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC:3.1.7.2)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TV88_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EMI49516.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
scnpilot_solids2_trim150_scaffold_498_13
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9730..10104)
DNA (375bp) protein (125aa)
hypothetical protein n=3 Tax=Xanthomonas axonopodis RepID=UPI0002E6391E
Hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:CEI14220.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
scnpilot_solids2_trim150_scaffold_498_14
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10289..10648)
DNA (360bp) protein (120aa)
sensory box histidine kinase/response regulator (EC:2.7.3.-); K00936 [EC:2.7.3.-]
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0003618982
Uncharacterized protein {ECO:0000313|EMBL:CEJ26331.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
scnpilot_solids2_trim150_scaffold_498_15
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10720..12357
DNA (1638bp) protein (546aa)
Putative Histidine kinase {ECO:0000313|EMBL:CEH51361.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CEH51361.1};; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00036D1D51 rbh
two-component signal transduction sensor histidine kinase
scnpilot_solids2_trim150_scaffold_498_16
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12403..13320
DNA (918bp) protein (306aa)
Putative UDP-galactose 4-epimerase {ECO:0000313|EMBL:CEH51354.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CEH51354.1};; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein n=2 Tax=Xanthomonas vasicola RepID=UPI00035E5D9E rbh
NAD-dependent epimerase/dehydratase family protein
scnpilot_solids2_trim150_scaffold_498_17
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13414..14103
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Xanthomonas vasicola RepID=UPI0003613A64
Response regulator {ECO:0000313|EMBL:CEH49145.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_498_18
unknown

Not on your lists

14539..15054
DNA (516bp) protein (172aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15003..16418)
DNA (1416bp) protein (472aa)
Primary replicative DNA helicase {ECO:0000313|EMBL:AGG88334.1}; EC=3.6.1.- {ECO:0000313|EMBL:AGG88334.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Rhodanobacter denitrificans RepID=I4WTK5_9GAMM
scnpilot_solids2_trim150_scaffold_498_20
unknown

Not on your lists

comp(16706..17782)
DNA (1077bp) protein (359aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_21
unknown

Not on your lists

comp(18007..18192)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_22
unknown

Not on your lists

comp(18227..18736)
DNA (510bp) protein (170aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_23
Pseudoalteromonas lipolytica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18796..20094)
DNA (1299bp) protein (433aa)
Uncharacterized protein {ECO:0000313|EMBL:EWH04416.1}; TaxID=1452721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas lipolytica SCSIO 04301.;"
scnpilot_solids2_trim150_scaffold_498_24
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20197..22617)
DNA (2421bp) protein (807aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
ATP-dependent DNA helicase II (Rep); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA/RNA helicase, superfamily I n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BKI1_9XANT rbh
scnpilot_solids2_trim150_scaffold_498_25
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22881..24017
DNA (1137bp) protein (379aa)
Gp37Gp68 family protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4T9X9_9XANT rbh
Gp37Gp68 family protein {ECO:0000313|EMBL:EFF46491.1}; TaxID=427082 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535.;"
phage Gp37Gp68 family protein
scnpilot_solids2_trim150_scaffold_498_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24094..24471
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8PYC6_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KFC64012.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_498_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24547..25089
DNA (543bp) protein (181aa)
KorF repressor protein n=2 Tax=Bacteria RepID=Q0E678_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:KJX85290.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
scnpilot_solids2_trim150_scaffold_498_28
unknown

Not on your lists

25195..25416
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_29
unknown

Not on your lists

25447..25770
DNA (324bp) protein (108aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_498_30
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26001..27854
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036481F0 rbh
Transposase, IS605 OrfB {ECO:0000313|EMBL:AIA55437.1}; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
Displaying items 1-30 of 81 in total

View Taxonomy