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scnpilot_solids2_trim150_scaffold_378_curated_10

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: comp(8634..9257)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XB72_NAKMY similarity UNIREF
DB: UNIREF100
  • Identity: 68.0
  • Coverage: 175.0
  • Bit_score: 249
  • Evalue 3.30e-63
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 68.0
  • Coverage: 175.0
  • Bit_score: 249
  • Evalue 1.00e-63
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACV81364.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.0
  • Coverage: 175.0
  • Bit_score: 249
  • Evalue 4.60e-63

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Taxonomy

Nakamurella multipartita → Nakamurella → Nakamurellales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 624
ATGGCGACCCGACATCTGTCCGCAGTGCCGGACGGGGATGACGGCGATACCGGGTCCACGTACGGCATCGGTGACGCGCGCGACCCGGGTGCGGAGTTGCTGCGGCGGACGGCGCTGGGCGATGCGGCCGCGTTCGACGAGCTGTATGGACTGTTCGCCTCGCGGGTGTTCGGCATCGCGCGGCGGGTGCTGCGCGACCCGGACCATGCGGAAGAGGTCGCGCAGGAGGTGTTCCTGGAGGTGTGGCGCCGGGCCAGCCGGTTCGACGCGGTACGCGGGTCTGCCTCGGCGTGGATCGTGGCGCTGGCGCATGCCCGCGCGGTGGACCGGGTGCGCTCCACACAGGCCGCCGCGGATCGCGAGGTCCGGGCGGGGCGGGCCGCCGTCGAGCGGGACATCGATTCGGTGTCCGAGGCGGTCGAGCACCGGATGGAGCGGGCCGCGGTGCGGAGGTGCCTGTCCACGCTAACGGAACTGCAGCGGCAGTCGGTGACGCTGGCGTACTACTCGGGCTACACCTATCCGCAGGTCGCGGAGCTGCTCGGTGCGGCGCTGTCGACGGTGAAGACGCGGATGCGTGACGGGTTGATCCGGCTGCGCGATTGCCTGGGGGTGACGAGATGA
PROTEIN sequence
Length: 208
MATRHLSAVPDGDDGDTGSTYGIGDARDPGAELLRRTALGDAAAFDELYGLFASRVFGIARRVLRDPDHAEEVAQEVFLEVWRRASRFDAVRGSASAWIVALAHARAVDRVRSTQAAADREVRAGRAAVERDIDSVSEAVEHRMERAAVRRCLSTLTELQRQSVTLAYYSGYTYPQVAELLGAALSTVKTRMRDGLIRLRDCLGVTR*