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scnpilot_solids2_trim150_scaffold_494_curated_17

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: 14939..15862

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B6V2_STRRD similarity UNIREF
DB: UNIREF100
  • Identity: 68.4
  • Coverage: 291.0
  • Bit_score: 403
  • Evalue 1.50e-109
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 68.4
  • Coverage: 291.0
  • Bit_score: 403
  • Evalue 4.80e-110
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACZ87690.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.4
  • Coverage: 291.0
  • Bit_score: 403
  • Evalue 2.20e-109

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Taxonomy

Streptosporangium roseum → Streptosporangium → Streptosporangiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 924
ATGATGACGGGACGGTCGGGGTCACCCGATGAGCAGCAGCGGTGGGCGATGGGCGAGCGCGCGCACCTGCTCAATGTGGGCTACCGGCTGCTCGGCTCGCTGGTCGAGGCCGAGGACGCCGTGCAGGAGGCTTACGCGCGGTGGCTCGCGCTGTCCCCGCAGCAGCGAGCGGGCATCGCAAATCCGGGTGCCTGGCTGACGACGGTGACCAGCCGGATCTGTCTCGACCTGCTTCGGTCCGCCCGGACGCGTCGGGAAGCGTATGTGGGCGACTGGATTCCCGAACCGCTGCCCGGGCCCGCCAACGTCGGCAACCTCCGGCCCGGCGAGGTGAACATCGATCCCGCGGACCGAATCACTCTGGACGAGTCCGTCGGCATGGCCCTGATGGTCGTGATGGAATCGTTGACGCCGGCCGAACGGGTGGCGTTCATCCTGCATGACGTGTTCGGCTACCCCTTTGCCGAGGTGGCCGACATCGTGGGCCGGAGCCCCGGTGCGTGCCGACAGCTGGCGTCGTCCGCGCGTGCCCGCATCCGGCAGTCGCGGGGATCGACGGCATCACCGAGGCGACAGGCGGCGGTGATTGGACAGTTCAAGCGCGCATGGCAGGCCAAGGACATCGGCGCCCTGGTGGGCCTGCTCGATCCCAGCGTCGTAGCCACGGCCGACGGCGGTGGCCGGGCGATCACCTTCCGGGATCCGATCGAGGGCCGCGATCAGGTGATCCAGGCCTGGCTGGAGCTCGCGGACCGGGTCGGCGACATGGCCTTCGTCGAGCGCACGGTCAACGGGCAGCCCGGTCTGGTCGCCAGCCAGGGTGGCGTCGTCGTCACCATCTTCGCGTTCGAGGTCGTCGACGATCGGATCAGGCACATCTGGGCGGTGCGCAATCCGGAAAAGCTCCGCGCCTGGGCCTCTTGA
PROTEIN sequence
Length: 308
MMTGRSGSPDEQQRWAMGERAHLLNVGYRLLGSLVEAEDAVQEAYARWLALSPQQRAGIANPGAWLTTVTSRICLDLLRSARTRREAYVGDWIPEPLPGPANVGNLRPGEVNIDPADRITLDESVGMALMVVMESLTPAERVAFILHDVFGYPFAEVADIVGRSPGACRQLASSARARIRQSRGSTASPRRQAAVIGQFKRAWQAKDIGALVGLLDPSVVATADGGGRAITFRDPIEGRDQVIQAWLELADRVGDMAFVERTVNGQPGLVASQGGVVVTIFAFEVVDDRIRHIWAVRNPEKLRAWAS*