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scnpilot_solids2_trim150_scaffold_292_curated_39

Organism: solids_Actinobacteria_2

near complete RP 45 / 55 MC: 2 BSCG 45 / 51 MC: 1 ASCG 10 / 38
Location: 38833..39402

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1HSU9_9PSEU similarity UNIREF
DB: UNIREF100
  • Identity: 46.1
  • Coverage: 165.0
  • Bit_score: 137
  • Evalue 1.70e-29
RNA polymerase sigma-70 factor, ECF subfamily protein {ECO:0000313|EMBL:EOD66645.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.1
  • Coverage: 165.0
  • Bit_score: 137
  • Evalue 2.30e-29
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 158.0
  • Bit_score: 133
  • Evalue 9.80e-29

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Taxonomy

Amycolatopsis vancoresmycina → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 570
GTGAGGGCTGGCGCGGAAGGGCTCGGTTTGGTGACGTTCGAGGAGTTCGTGGACGGGGAGCTGTTGTCCCTGGCCAGGTACGCGCGGGCGTTGACCAGCGACAGGCAACAGGCCCACGATGTGCTGGCCGACGCGCTGATGACTGCGCAGCTTCATTGGAAGCGTATCGACACGATGGCCCACCCAGCGGCATACGTCCGGCGAATCGTCACCACTACGTTCCTGGGCCAGCGGCGTCGCTGGTTCAACCGCAACGTGACAGTGACCGCTACCGGCGAGGTTCCGGATCAAGCGATGCCTGACCCGACCGGAGCCGTCGACGACCGCGACCACCTCCAGCAACTGCTGGCCCGGCTACCGCGCCAGCAGTGTGCCGCGATCGTGCTGCGGTTCTACCTCGACCTTGGCGACAACGACATTGCCGCTGAACTCGGCTGCACGTCGGGCACGGCCTGCTCATACATCTCGCGCGGACTGGCCACCTTACGGATCGCCGACACCGACGGGCCGACAAATGAGGACGCGACGATCGGTAGGGGCAGGCGGCGGCGCGGTCAGGAGAAGCGATGA
PROTEIN sequence
Length: 190
VRAGAEGLGLVTFEEFVDGELLSLARYARALTSDRQQAHDVLADALMTAQLHWKRIDTMAHPAAYVRRIVTTTFLGQRRRWFNRNVTVTATGEVPDQAMPDPTGAVDDRDHLQQLLARLPRQQCAAIVLRFYLDLGDNDIAAELGCTSGTACSYISRGLATLRIADTDGPTNEDATIGRGRRRRGQEKR*