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scnpilot_solids2_trim150_scaffold_1916_curated_10

Organism: solids_Actinobacteria_3

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(11322..11909)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.3
  • Coverage: 186.0
  • Bit_score: 79
  • Evalue 5.90e-12
hypothetical protein; K01975 2'-5' RNA ligase [EC:6.5.1.-] similarity KEGG
DB: KEGG
  • Identity: 26.9
  • Coverage: 186.0
  • Bit_score: 64
  • Evalue 3.40e-08
2''''-5'''' RNA ligase n=1 Tax=Salisaeta longa RepID=UPI0003B46FC0 similarity UNIREF
DB: UNIREF100
  • Identity: 35.8
  • Coverage: 179.0
  • Bit_score: 79
  • Evalue 3.20e-12

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Taxonomy

Magnetospira sp. QH-2 → Magnetospira → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 588
ATGGCAAGTCAAGAGAGGCAAGGGAAGCGACAGCGGCTGTTCGTGGCGCTCGATCTTCCCGACAAGATCCGAGACGGATTGACGGCGTGGGGGGAGGGCGAGCTGATCGACCCTGGCCTGCGGCCGGTGCGGCCGGAGTCGCTGCACGTGACGCTGGTCTTCCTCGGCCACCGCGAGGCGGACGAGGCGGCGGCGATCGTCGAGGCGGTGCGGAATCTGAGCGCTCCGCCGGTGCTGATGAAGCTCGAGGACCCGATCTCGCTGCCGCGCCGGCGGCGGGCGGCGGTGTTCGCGCTCCCGGCGCCGTCCCCGGCCACGACCGACCTCCACCACGGGTTGGTGGACAAGATGGTCACGGCGGGGCTCCACGAGGACGACGGGCGTGATTTCTGGCCCCACGTCACGGTCGCCAGGGTGCGTCAGGAAGGGCGTCGACCGCGCCGTCCGACGGCCGTCACGAGGCGCCCGGGAGACCTCCCGGACCCGCTCAAAGAGCCGTTCTATGCCGTCCGGTTGACGCTCTACCGTTCTGAACTCCAGCCAGGTGGTGCGCGCTACGTGCCGCTGGCCCAAGTCGAGCTGTCCTAG
PROTEIN sequence
Length: 196
MASQERQGKRQRLFVALDLPDKIRDGLTAWGEGELIDPGLRPVRPESLHVTLVFLGHREADEAAAIVEAVRNLSAPPVLMKLEDPISLPRRRRAAVFALPAPSPATTDLHHGLVDKMVTAGLHEDDGRDFWPHVTVARVRQEGRRPRRPTAVTRRPGDLPDPLKEPFYAVRLTLYRSELQPGGARYVPLAQVELS*