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scnpilot_solids2_trim150_scaffold_1084_curated_10

Organism: solids_Actinobacteria_3

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 ASCG 9 / 38
Location: comp(9973..11286)

Top 3 Functional Annotations

Value Algorithm Source
Extracellular ligand-binding receptor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0B7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 45.1
  • Coverage: 366.0
  • Bit_score: 332
  • Evalue 8.10e-88
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EYR84564.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.1
  • Coverage: 366.0
  • Bit_score: 332
  • Evalue 1.10e-87
extracellular ligand-binding receptor similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 367.0
  • Bit_score: 329
  • Evalue 1.60e-87

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1314
ATGGGAGAGGGATTCGCCGTATCTAAACGTCGTCGGAGCTGGTGGAGGTACCTGCTGGTCACACTGTGCGTCGCCGTCGGCAGCAGTGTGTTGGTCGCCTGCGGCGGCAGCGACGACAGCGGCGGTGGCGACACCGGCGCCGCGACCAGTGAAGCGACGGGCGAAGAAGGCTCGGGCGGCACCGAAACGGCCGCCGACACCGCCGAAAGCAGCGACGAACCGATCGTCATCGGCGCCGCGATCGGTGAATCGGGCTGGCTCGAAGCCACCGACGTGCCCGCCAAGGTGATGGAGGAATTCGCGATCGAAGACATCAACGCCGAAGGCGGCGTGCTCGGGCGGCCGCTCAAGCTGATCACCGCCGACACCGCCTCCGAACAGGCACAGGGCAGCACCGCGGCGCTGGAAGTGATCGAACAGGGCGCCGAAATGGTGATCGTCAGCTGTGACTTCGACTACGGCAGCCCGGCCGCGCTGGTCGCCCAGGAAAGCGACAAGATCGCCTTCTCGACCTGCGCGGGCTCGCCCAAGTTCGGCGTCCAGGGGATCGGCCCGAACGCCTACACGATGAGCAACGGGACCCCGGCGCTGGCGGGCGTGCTGGCCGAATTCGGCTACGAAGAGAAGGGCTTCCGCAACGCCTACATGTTGCTCGACGACACGATCGACTACGACAAAACCCTCTGCGCCGGCCTCGAAGAAGTGTGGCCGAAGCTGGGCGGCAAGATCGTCGGTCGGGACACCTACAAAAACGAAGACGCGTCGATCGCCTCGCAGATCTCCCGGCTCAAGTCGACGCCGGACGTCGACGTGATCTTCCAGTGCACCTACAACCCCGGTGGCGCCCAGGCGCTGCGGCAGCTCCGCAACGCCGGCGTCGACACGCCGGTGATCGGCTCGGAGTCCCAGGACGGTGACTACTGGCTGAACGCGGTCCCGAACCTGAGCGATTTCTACTACCAGACGTACGGTTCGATGTTCGGTGACGATCCGCGACCGCAGTTCAACCAGCTGGTCACGCGGTACACCAAGAAGGTCGGCGAACCGCCCGCCCAGGCGCTCGGCTTCACCGGCTACAGCGTGATCGAGATGTACGCCGCCGCGGTCGAGAAAGCCGGCACCACGGAAACCGCCGCGGTACGGGAAGCGCTGGACGAAATGGAAGACGTGCCGCTGCTGGTCGGCCCGACGACCTTCACCCCCGACACCCACATCAGCCTCCACCGGCCGATGGTGATCATGGAGGTGCAGAACGGGAAGCACGACTACGTCGAAACCCGTACCCCGAAGGTCATCTCGAAGGTCGAATACTAG
PROTEIN sequence
Length: 438
MGEGFAVSKRRRSWWRYLLVTLCVAVGSSVLVACGGSDDSGGGDTGAATSEATGEEGSGGTETAADTAESSDEPIVIGAAIGESGWLEATDVPAKVMEEFAIEDINAEGGVLGRPLKLITADTASEQAQGSTAALEVIEQGAEMVIVSCDFDYGSPAALVAQESDKIAFSTCAGSPKFGVQGIGPNAYTMSNGTPALAGVLAEFGYEEKGFRNAYMLLDDTIDYDKTLCAGLEEVWPKLGGKIVGRDTYKNEDASIASQISRLKSTPDVDVIFQCTYNPGGAQALRQLRNAGVDTPVIGSESQDGDYWLNAVPNLSDFYYQTYGSMFGDDPRPQFNQLVTRYTKKVGEPPAQALGFTGYSVIEMYAAAVEKAGTTETAAVREALDEMEDVPLLVGPTTFTPDTHISLHRPMVIMEVQNGKHDYVETRTPKVISKVEY*