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scnpilot_solids2_trim150_scaffold_5_curated

Search features with annotation key words

Displaying items 211-240 of 349 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_5_curated_211
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(217178..217873)
DNA (696bp) protein (232aa)
putative HpcH/HpaI aldolase/citrate lyase family protein; K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
Putative HpcH/HpaI aldolase/citrate lyase family protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A4H0_RHIFH
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids2_trim150_scaffold_5_curated_212
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218259..218726)
DNA (468bp) protein (156aa)
UPI0003D04BD1 related cluster n=1 Tax=unknown RepID=UPI0003D04BD1
ArsR family transcriptional regulator {ECO:0000313|EMBL:ESY87204.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
leucine-responsive regulatory protein
scnpilot_solids2_trim150_scaffold_5_curated_213
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

218916..221318
DNA (2403bp) protein (801aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
transketolase; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
UPI0003CFE47C related cluster n=1 Tax=unknown RepID=UPI0003CFE47C
scnpilot_solids2_trim150_scaffold_5_curated_214
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

221547..222686
DNA (1140bp) protein (380aa)
UPI0003D064B6 related cluster n=1 Tax=unknown RepID=UPI0003D064B6
Uncharacterized protein {ECO:0000313|EMBL:ESZ72421.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_215
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

222734..223846
DNA (1113bp) protein (371aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DU9_MESSB
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABG64426.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_5_curated_216
unknown

Not on your lists

224239..224421
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_5_curated_217
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(224548..225981)
DNA (1434bp) protein (478aa)
Amidase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ87_9BURK
Amidase {ECO:0000313|EMBL:EIK89277.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
amidase
scnpilot_solids2_trim150_scaffold_5_curated_218
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(225960..227396)
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ86_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89276.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_219
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227393..228244)
DNA (852bp) protein (284aa)
ABC transporter-like protein {ECO:0000313|EMBL:EIK89274.1}; EC=3.6.1.15 {ECO:0000313|EMBL:EIK89274.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030D16AC
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_5_curated_220
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(228241..229236)
DNA (996bp) protein (332aa)
Membrane lipoprotein lipid attachment site n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ83_9BURK
ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_5_curated_221
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(229256..230026)
DNA (771bp) protein (257aa)
Abc transporter permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ82_9BURK
Abc transporter permease protein {ECO:0000313|EMBL:EIK89272.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_5_curated_222
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(230023..231153)
DNA (1131bp) protein (377aa)
Mandelate racemase n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2N6A1_9ACTO
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase {ECO:0000313|EMBL:EHR60196.1}; Flags: Precursor;; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
mandelate racemase/muconate lactonizing protein
scnpilot_solids2_trim150_scaffold_5_curated_223
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(231158..232204)
DNA (1047bp) protein (349aa)
Dihydrodipicolinate synthetase family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ81_9BURK
Dihydrodipicolinate synthetase family protein {ECO:0000313|EMBL:EIK89271.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
dapA; Dihydrodipicolinate synthase
scnpilot_solids2_trim150_scaffold_5_curated_224
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(232204..233052)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ80_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89270.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_225
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(233039..234145)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F5EF4F
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EIK89269.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_226

Not on your lists

comp(234175..235101)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000369F940
AP endonuclease, family 2 {ECO:0000313|EMBL:BAL56761.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
xylose isomerase
scnpilot_solids2_trim150_scaffold_5_curated_227
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235208..235882)
DNA (675bp) protein (225aa)
Transcriptional regulator, TetR family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJ78_9BURK
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EIK89268.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcriptional regulator
scnpilot_solids2_trim150_scaffold_5_curated_228
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(235879..236739)
DNA (861bp) protein (287aa)
Putative D-tagatose 3-epimerase n=1 Tax=Rhodovulum sp. PH10 RepID=J9A0P8_9RHOB
Putative D-tagatose 3-epimerase {ECO:0000313|EMBL:EJW09340.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
xylose isomerase
scnpilot_solids2_trim150_scaffold_5_curated_229

Not on your lists

237203..237589
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M23_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KKN73634.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_230
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

237607..238116
DNA (510bp) protein (170aa)
RNA polymerase, sigma-24 subunit, RpoE n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M24_MESSB
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, RpoE {ECO:0000313|EMBL:ABG61551.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_5_curated_231
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238113..238886
DNA (774bp) protein (258aa)
Putative transmembrane anti-sigma factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M25_MESSB
putative transmembrane anti-sigma factor
Putative transmembrane anti-sigma factor {ECO:0000313|EMBL:ABG61550.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids2_trim150_scaffold_5_curated_232
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239105..241210)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GKJ0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP97758.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_233
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241245..241670)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GIY1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP97759.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
PA-phosphatase-like protein phosphoesterase
scnpilot_solids2_trim150_scaffold_5_curated_234
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242406..244199)
DNA (1794bp) protein (598aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7GHS4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP97760.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_235
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(244492..245172)
DNA (681bp) protein (227aa)
peroxiredoxin n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003715958
Peroxiredoxin {ECO:0000313|EMBL:EIG62364.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_236
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245192..248482)
DNA (3291bp) protein (1097aa)
adenylate cyclase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036C325F
hypothetical protein
Bll5958 protein {ECO:0000313|EMBL:BAC51223.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
scnpilot_solids2_trim150_scaffold_5_curated_237
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249464..249871
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF80_9BRAD">RepID=K8PF80_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC73989.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative signal peptide protein
scnpilot_solids2_trim150_scaffold_5_curated_238
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

250548..251771
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E9AF5
Uncharacterized protein {ECO:0000313|EMBL:CDX20813.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_5_curated_239
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253062..254402
DNA (1341bp) protein (447aa)
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K264_RHIEC
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXL03214.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative sugar ABC transporter, substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein
scnpilot_solids2_trim150_scaffold_5_curated_240
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254560..255870
DNA (1311bp) protein (437aa)
Permease component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF142 RepID=J1SX78_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EZQ13502.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
Displaying items 211-240 of 349 in total

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