ggKbase home page

scnpilot_solids2_trim150_scaffold_165_curated

Search features with annotation key words

Displaying items 61-83 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_165_curated_61
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66673..67545)
DNA (873bp) protein (291aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7X4_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDX22068.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
scnpilot_solids2_trim150_scaffold_165_curated_62
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67558..68412)
DNA (855bp) protein (285aa)
ABC transporter related protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKH8_MESCW
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:AGB47067.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_165_curated_63
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68477..69499)
DNA (1023bp) protein (341aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KSK6_MESAW
ABC transporter substrate binding protein {ECO:0000313|EMBL:CDX41126.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component
scnpilot_solids2_trim150_scaffold_165_curated_64
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69824..70273)
DNA (450bp) protein (150aa)
Universal stress protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYG2_9RHIZ
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_65
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70609..71784
DNA (1176bp) protein (392aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=39645 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri.;"
Phosphoserine aminotransferase n=2 Tax=Mesorhizobium ciceri RepID=E8TN20_MESCW
scnpilot_solids2_trim150_scaffold_165_curated_66
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71890..73488
DNA (1599bp) protein (533aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
3-phosphoglycerate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003653C2F
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ESZ25673.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
scnpilot_solids2_trim150_scaffold_165_curated_67
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73690..74592)
DNA (903bp) protein (301aa)
Membrane protein n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G4K5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AID33006.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_68
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74823..76121
DNA (1299bp) protein (433aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F4C0_9RHIZ
scnpilot_solids2_trim150_scaffold_165_curated_69
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76184..77857
DNA (1674bp) protein (558aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLC7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58456.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_70
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77941..78852)
DNA (912bp) protein (304aa)
UPI0003CE3FFE related cluster n=1 Tax=unknown RepID=UPI0003CE3FFE
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
RNA polymerase sigma factor RpoH; K03089 RNA polymerase sigma-32 factor
scnpilot_solids2_trim150_scaffold_165_curated_71
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79017..80051)
DNA (1035bp) protein (345aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ribosomal large subunit pseudouridine synthase, RluD subfamily; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
UPI0003CE9006 related cluster n=1 Tax=unknown RepID=UPI0003CE9006
scnpilot_solids2_trim150_scaffold_165_curated_72
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80076..80459
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DF655E
Putative fimbrial subunit PilA {ECO:0000313|EMBL:CDX34539.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
fimbrial subunit PilA
scnpilot_solids2_trim150_scaffold_165_curated_73
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(80874..82244)
DNA (1371bp) protein (457aa)
2-methylcitrate dehydratase (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CAC9_SPHTD
Tax=RBG_16_Caldithrix_48_16_curated
scnpilot_solids2_trim150_scaffold_165_curated_74
uncultured proteobacterium, Proteobacteria, Bacteria

Not on your lists

comp(82261..83235)
DNA (975bp) protein (325aa)
Putative zinc-containing alcohol dehydrogenase n=1 Tax=uncultured proteobacterium RepID=B7T9X3_9PROT
Putative zinc-containing alcohol dehydrogenase {ECO:0000313|EMBL:ACH69670.1}; TaxID=153809 species="Bacteria; Proteobacteria; environmental samples.;" source="uncultured proteobacterium.;"
quinone oxidoreductase
scnpilot_solids2_trim150_scaffold_165_curated_75
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83284..84138)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13H85_BURXL
hypothetical protein; K09709 mesaconyl-C4 CoA hydratase
Uncharacterized protein {ECO:0000313|EMBL:ABE36554.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_solids2_trim150_scaffold_165_curated_76
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84135..84566)
DNA (432bp) protein (144aa)
gamma-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
gamma-carboxymuconolactone decarboxylase n=1 Tax=Variovorax paradoxus RepID=UPI000372E3DE
Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein {ECO:0000313|EMBL:EHR04320.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
scnpilot_solids2_trim150_scaffold_165_curated_77
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84617..85447)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JH31_BURP8
3-keto-5-aminohexanoate cleavage protein {ECO:0000313|EMBL:KDR40480.1}; Uncharacterized protein {ECO:0000313|EMBL:CDY77035.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_165_curated_78
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85683..87155
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002EC1B5B
Tricarballylate dehydrogenase {ECO:0000313|EMBL:KID07047.1}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG1.;"
tricarballylate dehydrogenase
scnpilot_solids2_trim150_scaffold_165_curated_79
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87169..87987)
DNA (819bp) protein (273aa)
IclR family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q715_9RHIZ
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_solids2_trim150_scaffold_165_curated_80
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88103..88885)
DNA (783bp) protein (261aa)
3-oxoadipate enol-lactonase (EC:3.1.1.24); K14727 3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase [EC:3.1.1.24 4.1.1.44]
3-oxoadipate enol-lactonase n=1 Tax=Caulobacter sp. AP07 RepID=J2GKY7_9CAUL
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EJL30825.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
scnpilot_solids2_trim150_scaffold_165_curated_81
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(88897..89754)
DNA (858bp) protein (286aa)
alpha/beta hydrolase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B745AC
putative carboxylesterase protein
Tax=GWA2_Rokubacteria_70_23_curated
scnpilot_solids2_trim150_scaffold_165_curated_82
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89751..90170)
DNA (420bp) protein (140aa)
Alpha/beta hydrolase fold protein id=3963828 bin=GWA2_Methylomirabilis_73_35 species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_165_curated_83
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90394..91827
DNA (1434bp) protein (478aa)
hypothetical protein; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DLS0_BRAJP
Aldehyde dehydrogenase {ECO:0000313|EMBL:KGT76299.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
Displaying items 61-83 of 83 in total

View Taxonomy