ggKbase home page

scnpilot_solids2_trim150_scaffold_160_curated

Search features with annotation key words

Displaying items 121-150 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_160_curated_121
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121420..121830
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D142_9RHIZ
DNA-binding protein {ECO:0000313|EMBL:KJS15826.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
PilT protein domain-containing protein; K07062
scnpilot_solids2_trim150_scaffold_160_curated_122
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

121844..122464
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLH2_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_123
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122527..122817
DNA (291bp) protein (97aa)
Regulators of stationary/sporulation gene expression protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLH1_9RHIZ
Regulators of stationary/sporulation gene expression protein {ECO:0000313|EMBL:EHK58369.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Regulators of stationary/sporulation gene expression protein
scnpilot_solids2_trim150_scaffold_160_curated_124
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122814..123212
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLH0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58368.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_125
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123209..124249
DNA (1041bp) protein (347aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction DNA helicase RuvB n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E02EB4
scnpilot_solids2_trim150_scaffold_160_curated_126
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124436..124906
DNA (471bp) protein (157aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003733128
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:ESY82776.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
scnpilot_solids2_trim150_scaffold_160_curated_127
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125142..125858
DNA (717bp) protein (239aa)
biopolymer transporter ExbB n=1 Tax=Hoeflea sp. 108 RepID=UPI00038169D0
Membrane spanning protein in TolA-TolQ-TolR complex {ECO:0000313|EMBL:CDX23376.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
TolQ protein
scnpilot_solids2_trim150_scaffold_160_curated_128
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125895..126347
DNA (453bp) protein (151aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLG6_9RHIZ
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EHK58364.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
protein TolR; K03560 biopolymer transport protein TolR
scnpilot_solids2_trim150_scaffold_160_curated_129
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126360..127415
DNA (1056bp) protein (352aa)
TolA, TolA protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLG5_9RHIZ
TolA, TolA protein {ECO:0000313|EMBL:EHK58363.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
TolA, TolA protein
scnpilot_solids2_trim150_scaffold_160_curated_130
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127449..128771
DNA (1323bp) protein (441aa)
Protein TolB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLG4_9RHIZ
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Tol-Pal system beta propeller repeat-containing protein TolB; K03641 TolB protein
scnpilot_solids2_trim150_scaffold_160_curated_131
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129021..129521
DNA (501bp) protein (167aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364E90A
Peptidoglycan-associated outer membrane lipoprotein {ECO:0000313|EMBL:CDX25155.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
scnpilot_solids2_trim150_scaffold_160_curated_132
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

129687..130742
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PKW9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41772.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
tol-pal system protein YbgF
scnpilot_solids2_trim150_scaffold_160_curated_133
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130736..132067
DNA (1332bp) protein (444aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLG0_9RHIZ
tRNA(Ile)-lysidine synthetase
scnpilot_solids2_trim150_scaffold_160_curated_134
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132192..134129
DNA (1938bp) protein (646aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-]
cell division protein FtsH n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FB30C1
scnpilot_solids2_trim150_scaffold_160_curated_135
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134275..135795)
DNA (1521bp) protein (507aa)
amidase; K01426 amidase [EC:3.5.1.4]
UPI0003D6B6D3 related cluster n=1 Tax=unknown RepID=UPI0003D6B6D3
Uncharacterized protein {ECO:0000313|EMBL:AHD03566.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
scnpilot_solids2_trim150_scaffold_160_curated_136
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135932..136948
DNA (1017bp) protein (339aa)
2OG-Fe(II) oxygenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNM6_9RHIZ
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:CDX18874.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
oxidoreductase; K06892
scnpilot_solids2_trim150_scaffold_160_curated_137
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136969..138261)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BS20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM72372.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_138
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138258..139376)
DNA (1119bp) protein (373aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
3-dehydroquinate synthase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DE89FB
3-dehydroquinate synthase
scnpilot_solids2_trim150_scaffold_160_curated_139
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139373..139990)
DNA (618bp) protein (206aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EBD94
scnpilot_solids2_trim150_scaffold_160_curated_140
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140242..140421
DNA (180bp) protein (60aa)
UPI0003CE00F7 related cluster n=1 Tax=unknown RepID=UPI0003CE00F7
Signal peptide protein {ECO:0000313|EMBL:ESY75266.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_141
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140418..141353
DNA (936bp) protein (312aa)
tyrosine recombinase XerD n=1 Tax=Hoeflea sp. 108 RepID=UPI00037174B1
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
scnpilot_solids2_trim150_scaffold_160_curated_142
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141440..142384
DNA (945bp) protein (315aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium
acetyl-CoA carboxylase carboxyltransferase subunit alpha; K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-CoA carboxylase subunit alpha n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FDF9_9RHIZ
scnpilot_solids2_trim150_scaffold_160_curated_143
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142600..143910
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHM6_MESAW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB44030.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids2_trim150_scaffold_160_curated_144
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143907..144140
DNA (234bp) protein (78aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MYY0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF17168.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
scnpilot_solids2_trim150_scaffold_160_curated_145
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144214..145293)
DNA (1080bp) protein (360aa)
Cobalamin synthesis protein P47K n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9F6_MESCW
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADV10659.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids2_trim150_scaffold_160_curated_146
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145302..146411)
DNA (1110bp) protein (370aa)
penicillin-binding protein; K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Penicillin-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1K9_9RHIZ
Penicillin-binding protein {ECO:0000313|EMBL:CCV11247.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
scnpilot_solids2_trim150_scaffold_160_curated_147
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146627..147793
DNA (1167bp) protein (389aa)
Amidohydrolase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KG93_MESAW
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ESY97929.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
scnpilot_solids2_trim150_scaffold_160_curated_148
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

148252..149931
DNA (1680bp) protein (560aa)
Conserved hypothetical membrane protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YMD2_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:ETR79102.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_160_curated_149
R_NC10_66_22, NC10, Bacteria

Not on your lists

150119..151186
DNA (1068bp) protein (356aa)
Extracellular solute-binding protein family 1 n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EEQ8_AMICL
family 1 extracellular solute-binding protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
scnpilot_solids2_trim150_scaffold_160_curated_150
R_NC10_66_22, NC10, Bacteria

Not on your lists

151450..153138
DNA (1689bp) protein (563aa)
ABC transporter, permease protein n=1 Tax=Jonquetella sp. BV3C21 RepID=U2V0Y3_9BACT
Fe3+ ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying items 121-150 of 220 in total

View Taxonomy