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scnpilot_solids2_trim150_scaffold_533_curated_18

Organism: solids_Rhizobiales_1

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: comp(15076..15585)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000310E220 similarity UNIREF
DB: UNIREF100
  • Identity: 34.9
  • Coverage: 149.0
  • Bit_score: 83
  • Evalue 2.50e-13
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 33.3
  • Coverage: 156.0
  • Bit_score: 81
  • Evalue 1.30e-12
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 32.7
  • Coverage: 156.0
  • Bit_score: 79
  • Evalue 8.80e-13

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Taxonomy

Mesorhizobium sp. LNHC209A00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 510
ATGCCGTCCGAGTTCAGAAACGACCTGCTGGCCCTCGTTCCATCGCTGAGGGCATTCGCGTTCTGCCTGACGCAGGACCAATCCGAAGCGGATGATCTCGTCTATCGATCCCTGTGCGAAATCTGGCCACGGCACCGCTTCAGGAAGGGCGTGGAACTGAGAGTAGCGGCATTCACTGTCGTCGACAGACAGTATCCAAGGAGACGTCCAGCGAATCCTGTGTCGGCTCATACGGCCAGGGCATCACGAGCCGAAGGTCAGGAGCGCCTCTTCGCCATCTTTGAATCCTTGGATCGGGACGAGCGGGAGGCGTTGTCGCTGGTGGTGGTGTGGGGTTTCACCGATGATCAGGCGGCATGCATCTGCGGTATCGACACATGCACGCTGGGACTTCGCATTACGAATGCTTACCTCCATCTGGCGCACGGCTTGCCGCTGCGGACCCATGCCGTCAGTTCGGATCGGGTGAACATTCGGCGCAAGCCGACGAAGGAACGCTGCCATGGATGA
PROTEIN sequence
Length: 170
MPSEFRNDLLALVPSLRAFAFCLTQDQSEADDLVYRSLCEIWPRHRFRKGVELRVAAFTVVDRQYPRRRPANPVSAHTARASRAEGQERLFAIFESLDRDEREALSLVVVWGFTDDQAACICGIDTCTLGLRITNAYLHLAHGLPLRTHAVSSDRVNIRRKPTKERCHG*