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scnpilot_solids2_trim150_scaffold_3229_curated_5

Organism: solids_Rhodanobacter_2

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: comp(4477..5070)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Q2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 95.4
  • Coverage: 197.0
  • Bit_score: 378
  • Evalue 4.40e-102
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIL95143.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.4
  • Coverage: 197.0
  • Bit_score: 378
  • Evalue 6.20e-102
RNA polymerase, sigma-24 subunit, RpoE similarity KEGG
DB: KEGG
  • Identity: 94.9
  • Coverage: 196.0
  • Bit_score: 374
  • Evalue 2.00e-101

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
ATGGGCGAAAACGAACTGGACCGCGCGCTGGTCGAGCGGGTCCAGCAGGGGGACAAGCGCGCCTTCGACCTGCTCGTGCGCAAGTACCAGCACAAGCTGATCGGGCTGATCTCCCGCTACGTGCGCAGCCACGCCGAGTGCGAGGACATCGCGCAGGAGTCTTTCATCCGCGCCTGGCGCGCGATCGGCTCGTTCCGCGGCGACAGCGCGTTCTACACCTGGCTGTACAAGATCGCCGTCAACACCGCCAAGAACCACCTGGTGGCGATGGGCCGGCGCCCGCCGTCCGGCGACGTGGATGCGGACGATGCCGAATTCATGGCCGGGGCCGAGCGCATGCACGACGGCGCCACCCCCGAGCACGAATTGATGCGCCAGGAAATTGAACAATCGGTGTTTTCCACTGTCCAAGCCCTGCCCGAGGAGCTGCGGACCGCCATCACCCTGCGGGAGGTGGACGGTCTCAGCTATGAAGAAATCGCCGAAGCGATGGGCTGTCCGATCGGTACGGTGCGTTCGCGCATCTTCCGGGCGCGCGAGGCGATCGACGAAAAGCTGCGGCCACTGCTGTCTGGCCGCGAGGATCCGACATGA
PROTEIN sequence
Length: 198
MGENELDRALVERVQQGDKRAFDLLVRKYQHKLIGLISRYVRSHAECEDIAQESFIRAWRAIGSFRGDSAFYTWLYKIAVNTAKNHLVAMGRRPPSGDVDADDAEFMAGAERMHDGATPEHELMRQEIEQSVFSTVQALPEELRTAITLREVDGLSYEEIAEAMGCPIGTVRSRIFRAREAIDEKLRPLLSGREDPT*