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scnpilot_solids2_trim150_scaffold_986_curated_18

Organism: solids_Rhodanobacter_2

partial RP 29 / 55 BSCG 27 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: 26466..27719

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM72_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 82.7
  • Coverage: 416.0
  • Bit_score: 678
  • Evalue 5.70e-192
ECF subfamily RNA polymerase sigma factor {ECO:0000313|EMBL:EIM00564.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 416.0
  • Bit_score: 678
  • Evalue 8.00e-192
RNA polymerase, sigma subunit, ECF family similarity KEGG
DB: KEGG
  • Identity: 81.2
  • Coverage: 415.0
  • Bit_score: 663
  • Evalue 3.50e-188

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1254
ATGACCGACACCCACCACGCCATCGACGCCGTCTGGCGCATCGAATCGGCCCGGCTGATCGCCGGCCTGGTGCGCATGCTGCGCGATGTCGGGCTGGCCGAGGAGCTGGCACAGGATGCGCTGGTGACGGCATTGGAACAGTGGCCGCAGACCGGCGTGCCGGACAACCCCGGCGCCTGGCTGATGACCACCGCCAAGCACCGAGCCATCGATCGCCTGCGCCGGCACAAGCTGGTCGAACGCAAGCACCAGCAACTCGTGCACGAGTGGGAACGCGAGCATGAATCGGCCGAGGCCGTTGCCGAACGCACGCAGGACGATCCGTTCGGCGACGACCTGCTGCGGCTGATCTTCACCGCCTGCCACCCGCTGCTGTCGATGGAGGCGCGCGTGGCGCTGACGTTGCGTCTGCTTGGCGGCTTGAGTACGGACGAGATCGCGCGCGCCTTCCTGGTGCCGGAGGCGACCATCGCCCAGCGCATCGTGCGCGCCAAGCGCAGTCTGGCGAAATCGGAGGTGGCCTACGAAGTGCCGCACGGCGACGAGCTGGCGCAGCGCCTGGCCGCCGTGCTCGGCGTGATCTACCTGATCTTCAACGAGGGCTACGCGGCGACGGCCGGCGACGACTGGATGCGGCCGGGCCTGTGCGAGGACGCGCTGCGGCTGGGCCGCGTGCTGGCCGGACTGATGCCGCGCGAGCCGGAAGTGCACGGGCTGGTGGCGCTGATGGAGATCCAGGCCTCGCGCGCGCGCTCGCGCACCGATGCGGGCGGCGAGCCGATCCTGCTGCTCGACCAGGATCGCGCGCTGTGGGATCGCCTGCTGATCGGCCGCGGCCTGGCCGCGCTGGAACAGGCGCGCCGGCTGGGCGGCGAGCGCGGGCCGTATGCCCTGCAGGCGGCAGTGGCGGCTTGTCATGTGCGCGCCGCCGCCGCGGCGGATACCGACTGGTCGCGGATCGCCGCGCTGTACGCGGTGCTGGCCGAGGTCTCGCCCTCGCCGGTGGTGGAACTCAACCGCGCGGTGGCGGTGGGCATGGCCGATGGCGCGGCCGAGGGCCTGGCCCTGGTCGATGCGCTGGGCGAGGAGCCGAGCCTGCGCCACTATCACCTGCTGCCCGCCGTGCGCGGCGACCTGCTGGCGCGGCTGGGCCGCGGCGAGGAGGCGAGTCGGGAGTTCGAACGCGCCGCCACGCTGACCCGCAACCGCCGCGAGCAGGCCATGATGCGCGAGCGGGCGCGTGCCTGCCGGTAG
PROTEIN sequence
Length: 418
MTDTHHAIDAVWRIESARLIAGLVRMLRDVGLAEELAQDALVTALEQWPQTGVPDNPGAWLMTTAKHRAIDRLRRHKLVERKHQQLVHEWEREHESAEAVAERTQDDPFGDDLLRLIFTACHPLLSMEARVALTLRLLGGLSTDEIARAFLVPEATIAQRIVRAKRSLAKSEVAYEVPHGDELAQRLAAVLGVIYLIFNEGYAATAGDDWMRPGLCEDALRLGRVLAGLMPREPEVHGLVALMEIQASRARSRTDAGGEPILLLDQDRALWDRLLIGRGLAALEQARRLGGERGPYALQAAVAACHVRAAAAADTDWSRIAALYAVLAEVSPSPVVELNRAVAVGMADGAAEGLALVDALGEEPSLRHYHLLPAVRGDLLARLGRGEEASREFERAATLTRNRREQAMMRERARACR*