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scnpilot_solids2_trim150_scaffold_709_curated_22

Organism: solids_Sphingobacteriales_2

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 11 / 38
Location: comp(20042..20578)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T9P2_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 54.5
  • Coverage: 178.0
  • Bit_score: 198
  • Evalue 7.40e-48
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KIC93110.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.0
  • Coverage: 182.0
  • Bit_score: 214
  • Evalue 1.10e-52
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 178.0
  • Bit_score: 198
  • Evalue 2.30e-48

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Taxonomy

Flavihumibacter solisilvae → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 537
ATGAGTGATGAGGAATTGTTGAAAAACTTTCGGAATGACGGGAACAATAAATGGCTGGGTATTTTGTTGCCACGTTATTCGCTGTTGCTTTTCGGGGTTTGTATGAAGTATTTGAAAAATGAGGAAGATGCACGCGATAGTGTACAACAGATCTTTGTAAAGGTCATTGACGAATTAAAAAAATACGAGGTGACTTATTTTAAAAGCTGGATTTATATGGTGGCAAAAAATTATTGCCTGATGCAAATCCGGAATCATAAAAATGTCCCTGCCGAATGGAATGACAATATTCAGATTGCAGAGGATGCGGATGACAGGGAATCCCGCAAAAACAAAGAAAGATTATTAAATGAACTTCATGAAAATCTTTCCAAACTGAAACCCGGACAACGCCAATGCCTCGATTATTTTTATTTGCAGAAAAAAAGTTACGCTGAAATAAGTCAACTGACGGGTTTCACTATTTCACAGGTAAAAAGTTATCTGCAAAATGGAAAAAGAAACCTTGAACTTCTGATGCATGAAAATAACAAATAA
PROTEIN sequence
Length: 179
MSDEELLKNFRNDGNNKWLGILLPRYSLLLFGVCMKYLKNEEDARDSVQQIFVKVIDELKKYEVTYFKSWIYMVAKNYCLMQIRNHKNVPAEWNDNIQIAEDADDRESRKNKERLLNELHENLSKLKPGQRQCLDYFYLQKKSYAEISQLTGFTISQVKSYLQNGKRNLELLMHENNK*