ggKbase home page

scnpilot_solids2_trim150_scaffold_737_curated_4

Organism: solids_Sphingobacteriales_2

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 11 / 38
Location: comp(6877..7449)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMR2_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 70.5
  • Coverage: 183.0
  • Bit_score: 273
  • Evalue 1.50e-70
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 70.5
  • Coverage: 183.0
  • Bit_score: 273
  • Evalue 4.70e-71
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03083.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.5
  • Coverage: 183.0
  • Bit_score: 273
  • Evalue 2.10e-70

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 573
ATGACTGAAGAACAACTGATTCAAGGCTGTCGGGAAAACCTTGCAACCGCACAGGAGGAAATGTATGCTCATTTCAGTCCGCGCATGCTCGGTGTGTGTTACAGATATGGGAAGAGCAGGGAAGATGCTGAAGATATGTTACAGGAGGGGTTTATAAAAGTTTTTAATCAGATTCACCAGTTCAAGGGTGAAGGTTCTTTGGAAGGTTGGGTCAGGCGGATTATAGTGCACACTTGTATTAATCATTTAAAAAAGAACAAAAAGTTTAATGAAAGTGTGTCTCTTGTCAATGCCTGCGATGTTCGTGTCAGGGATTACAGTGTACCCTCCATGCTTCAGGCAAAGCAGGTGGTTGAGTGCATCAGGTTGCTTCCTCTCGGATACCGTACCGTACTTAACCTTTACGCTATTGAGGGATTCTCGCATAAAGAGATTGGCAGCATTCTGGATATAGAGGAAAGTACGAGCCGGTCTCAATACACGAGAGCCAAAGCTTTGTTGGAAGAGATTTTGATTAAAAGAAAAATCCTACCGGAAAAAGAAAAGGTAAGATTGGTTTCAGGGGAACCCTAA
PROTEIN sequence
Length: 191
MTEEQLIQGCRENLATAQEEMYAHFSPRMLGVCYRYGKSREDAEDMLQEGFIKVFNQIHQFKGEGSLEGWVRRIIVHTCINHLKKNKKFNESVSLVNACDVRVRDYSVPSMLQAKQVVECIRLLPLGYRTVLNLYAIEGFSHKEIGSILDIEESTSRSQYTRAKALLEEILIKRKILPEKEKVRLVSGEP*