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scnpilot_solids2_trim150_scaffold_1147_curated_6

Organism: solids_Sphingobacteriales_2

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 11 / 38
Location: comp(4573..5058)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIN8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 65.9
  • Coverage: 167.0
  • Bit_score: 224
  • Evalue 8.80e-56
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO45294.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.1
  • Coverage: 161.0
  • Bit_score: 230
  • Evalue 2.20e-57
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.9
  • Coverage: 167.0
  • Bit_score: 224
  • Evalue 2.80e-56

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Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 486
ATGACAGAAAAAGATTATAATGATTGTGTTACAAACTATGCAGACAATGTATATCGGTTTGTGTTGAAAAATATCCGGCAGGAAGAAGATGCAAAGGACATTATTCAAAGTGCATTTGAAAAGTTGTGGGTGAACAGGAAAAAAGTGGAAAATGAAAAAAGCAAATCGTATCTCTTCACCGTGGCCTACCATCAGATGATTGACCACATCCGGCGGAACAGCAGGACAACTTTGAAAGAAGATCTCAGTGATACACCGGTTTTTACCTCACATTCACAACCCGATGTAAAAAAAATATTGAATGAAGCGCTTTACAAATTAAATGAAACACAGCGAAGCCTTGTATTATTGAAAGATTATGAAGGATACAATTATGAAGAAATAGCACAAATCACTTCGCTGAACCTGAGCCAGGTAAAAGTTTACCTGCACAGGGCACGGATACAGTTGAAAAACTATCTGGTTAAACCTGAAAACATTATCTGA
PROTEIN sequence
Length: 162
MTEKDYNDCVTNYADNVYRFVLKNIRQEEDAKDIIQSAFEKLWVNRKKVENEKSKSYLFTVAYHQMIDHIRRNSRTTLKEDLSDTPVFTSHSQPDVKKILNEALYKLNETQRSLVLLKDYEGYNYEEIAQITSLNLSQVKVYLHRARIQLKNYLVKPENII*