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SCNpilot_solid_1_scaffold_42895_2

Organism: SCNPILOT_SOLID_1_Microbacterium__7

near complete RP 50 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 1083..1556

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Microbacterium sp. 292MF RepID=UPI000361AD79 similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 164.0
  • Bit_score: 151
  • Evalue 7.00e-34
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1 similarity UNIPROT
DB: UniProtKB
  • Identity: 56.6
  • Coverage: 159.0
  • Bit_score: 144
  • Evalue 1.60e-31
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 158.0
  • Bit_score: 127
  • Evalue 3.10e-27

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Taxonomy

Microbacterium sp. TS-1 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 474
GTGACCGCAGGCACGAAGACCACCACCCGTTCACGAGCGAAGGACGCCGAGCCCGACGAGACCGTGGACGAGGCGGCACAGACCGGTGCGGCACCGGGCAAGGGCGCGGCCAAGAAGACTCCGGCGAACAAGAGCGCCGCCAAGAAGACGACCGCGAAGAAGGCTGCCGCCAAGAAGTCCGACGAGCCCGAGGAAGACGACGAGTTCGACGACGACGAGGTCGACGTCGAGGACGAGGTCGACGACGAGGAAGAGGACGACGAGCCGGCTGAGACGCCGAAGGGCAAGAGCTCGAAGAAGTCGGCCTCCACCGACGACGACGATGACGACGAGGAGGCCGGAACGCCCAAGAAGGCCGAGTTCACCGAACCGCTTCCCTCGGGAGCGATCGTCATCTCGTCGAAGGACGAAGAGGATGTCCCGGTCTACTCCACGCAGATCACCGGCGCGACGGCCGACCCGGTCAAGGACTAT
PROTEIN sequence
Length: 158
VTAGTKTTTRSRAKDAEPDETVDEAAQTGAAPGKGAAKKTPANKSAAKKTTAKKAAAKKSDEPEEDDEFDDDEVDVEDEVDDEEEDDEPAETPKGKSSKKSASTDDDDDDEEAGTPKKAEFTEPLPSGAIVISSKDEEDVPVYSTQITGATADPVKDY