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SCNpilot_solid_1_scaffold_55805_1

Organism: SCNPILOT_SOLID_1_Microbacterium__7

near complete RP 50 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: 3..242

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9T9_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 79.0
  • Bit_score: 156
  • Evalue 1.40e-35
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 79.0
  • Bit_score: 156
  • Evalue 4.00e-36
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 79.0
  • Bit_score: 156
  • Evalue 2.00e-35

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Taxonomy

Microbacterium testaceum → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 240
GCGGTAGGGTTCACGATGCTGCAGCGCCAGCTCGAGTCGCTCCTGGACTCGCTGAGCGAGCGCGAGGCGGGGGTCATCCGGATGCGGTTCGGTCTCGGCGATGGGCAGCCCAAGACGCTCGACCAGATCGGCGACACGTTCGGGGTCACGCGCGAGCGGATCCGTCAGATCGAGTCGAAGACCATGGCCAAGCTCCGCCATCCCTCGCGTTCGCAGTCGCTGCGGGACTACCTCGAATGA
PROTEIN sequence
Length: 80
AVGFTMLQRQLESLLDSLSEREAGVIRMRFGLGDGQPKTLDQIGDTFGVTRERIRQIESKTMAKLRHPSRSQSLRDYLE*