ggKbase home page

scnpilot_solids1_trim150_scaffold_2677_5

Organism: SCNPILOT_SOLID_1_TRIM150_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 16
Location: comp(4906..6675)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirD4 component n=1 Tax=Xanthomonas gardneri ATCC 19865 RepID=F0C3K7_9XANT similarity UNIREF
DB: UNIREF100
  • Identity: 53.2
  • Coverage: 579.0
  • Bit_score: 616
  • Evalue 3.80e-173
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:EGD19881.1}; Flags: Precursor;; TaxID=925777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas gardneri ATCC 19865.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.2
  • Coverage: 579.0
  • Bit_score: 616
  • Evalue 5.30e-173
putative NTPase VagA; K03205 type IV secretion system protein VirD4 similarity KEGG
DB: KEGG
  • Identity: 47.6
  • Coverage: 571.0
  • Bit_score: 528
  • Evalue 3.20e-147
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Xanthomonas gardneri → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1770
ATGAATGGCAAGACCCGGGCCATCGTGGTCGTCGTTCTGGGGATGTTGGCCGTGGGGGCGGGCGCCATGCTCGCCGGCGCGCTGACGCTGTGGCGGTTGAAGCTGTCGATCCCGCTGGAGTTCACCACGTGGTGGCAGTACGCGCGGGCGCTGGATCTGCCGCAGCTCGCGCCGTATGCGGGCACGATCAAATTCGCCGGTTACGCCGGTTTCGGACTGCCGTTGCTGCTCTGGGTGATCGTGGCGGTGTTCGTGCTCAAGCCGCGCGCGAAGGCGTTCCACGGCGATGCGCGCTTCGCCAGCCGGGCGGATCTGGCCCGGGCAGGGCTGCTGAAGCCGGGCACCGATGGCGTGGTCATCGGACGTTCCGGTGGCCGTTTCCTGTACCTGCGCGGCCTGCAGCACATCATCATGACCGCGCCCACGCGCACCGGCAAAACCAGCAGCATCGCGATCCCGGTGTTGCTCAGCTACGGCCATTCGGCGGTGGTGATGGATCTGAAGGGCGAGCTGTTCCAGGCCACCAGCGGTTACCGGCGTACGCTGGGCCAGACGATCTGCAAGTTCGCACCGTACGCGGAAGATGGTCGCACGCACCGCTTCAACCCGTTCCTGTGCCTGTCGTCCGACCCGCGTGTGCGGGTCAGCGAGATCCAGACCATCGGCGCGATCCTCTATCCCGACGAGCCACAGAAAGATCCGTTCTGGACGGCGCAGGCGCGCAGTGCATTCCTGGGCTTCGCTTCGTACATGTACGAGCTGTGGGACGAGCGCGTGGCCGGCGGCATGCGGCTGGATCCCAATGTCGACGCGTCGTTTCCCAGCCTCGAACGCATCTACCGGCTCACCAGCGGCGACGGCCGCGGCGGCGACTTCAAGCAGACGATCAGGCAGTGGCTGGATGATCGGTCCGTTCTCAGTGAGCAGACACGCACCACGCTGTCCGGCCTCGTCGGCCTGGCCACCGAGACGTTCTCCTCGGTGATCGCCACCGTGCAGGAGCCGCTGCAGCAGTTCATCAGCCCGATCCTGGCCGCCGCCACCAACGCCAGTGATTTCGATGTGGCCAGCTTGCGCCGGCAGCCGATGACGATCTACGTGGTGATCCCGCCGGCGAAGCTGGGCGAATCGGGCAAGCTTCTCAACATCTTCTTCTCCACCGTGGTCGGCCAGAACCTGAAGACGACGCCGCAGGAAGACCCCTCCATCACGCACCAGGTGTTGCTGCTGATGGACGAGTTCACCGCGATGGGGCGGGTGAACGCGTTGTCCGAGCGCATCTCGATCACCGCCGGCTACTGGGTGCGCGACCTGACCATCATCCAGAGCAACTCGCAGCTGCGCGCTACCTACGGCGCGGATGCCGCGCAGACCTACGTGACCAACCATGCGGCGAGCATCGTGTTCACCCCGCGTGAGCAGCAGGATGCGGAGGATTATTCGAAGATGCTCGGCGACACCACCGTGCGCCGCCGCCAGCGCACCGTGAGCAAGGGCGGCACCTCCTGGAGCCACAGCGAGGACCGCCGCCCGCTGATGCTGCCGCAGGAGTTGAAAGGCCTGCCCAACGACGACGAGATCATCTTCTACGAAGGTTGCCCGCCGATCCGCTGTCGCAAAAACTGGTATTTCAAGAGTGCGTACTTCCGCAAGCGTGTGCTGTCGCCGGTGGAGATCAAGCCCGTCGCGCCCGCCACCGCAGCCCGGCGATCGGTCAACGTCACCGTGCTGGACGAGGCGGTGGCGTTGCGGGCGCTGGCGGAGGGATAG
PROTEIN sequence
Length: 590
MNGKTRAIVVVVLGMLAVGAGAMLAGALTLWRLKLSIPLEFTTWWQYARALDLPQLAPYAGTIKFAGYAGFGLPLLLWVIVAVFVLKPRAKAFHGDARFASRADLARAGLLKPGTDGVVIGRSGGRFLYLRGLQHIIMTAPTRTGKTSSIAIPVLLSYGHSAVVMDLKGELFQATSGYRRTLGQTICKFAPYAEDGRTHRFNPFLCLSSDPRVRVSEIQTIGAILYPDEPQKDPFWTAQARSAFLGFASYMYELWDERVAGGMRLDPNVDASFPSLERIYRLTSGDGRGGDFKQTIRQWLDDRSVLSEQTRTTLSGLVGLATETFSSVIATVQEPLQQFISPILAAATNASDFDVASLRRQPMTIYVVIPPAKLGESGKLLNIFFSTVVGQNLKTTPQEDPSITHQVLLLMDEFTAMGRVNALSERISITAGYWVRDLTIIQSNSQLRATYGADAAQTYVTNHAASIVFTPREQQDAEDYSKMLGDTTVRRRQRTVSKGGTSWSHSEDRRPLMLPQELKGLPNDDEIIFYEGCPPIRCRKNWYFKSAYFRKRVLSPVEIKPVAPATAARRSVNVTVLDEAVALRALAEG*