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scnpilot_solids1_trim150_scaffold_16

Search features with annotation key words

Displaying items 61-90 of 245 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_16_61
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

63589..64362
DNA (774bp) protein (258aa)
ABC transporter related n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UEI8_METS4
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
Tax=RBG_16_Deltaproteobacteria_64_85_curated
scnpilot_solids1_trim150_scaffold_16_62
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

64355..65086
DNA (732bp) protein (244aa)
ABC transporter related protein n=6 Tax=Pelosinus fermentans RepID=I8RHV9_9FIRM id=5223256 bin=16ft_combo_ws3_JS1 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
scnpilot_solids1_trim150_scaffold_16_63
BJP_IG2102_Desulfovibrionales_64_25, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65083..65976
DNA (894bp) protein (298aa)
ABC transporter permease n=1 Tax=Janthinobacterium lividum RepID=UPI000287DA89
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Tax=BJP_IG2102_Desulfovibrionales_64_25
scnpilot_solids1_trim150_scaffold_16_64
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65973..66926
DNA (954bp) protein (318aa)
Inner-membrane translocator n=1 Tax=Geobacter sp. (strain M18) RepID=E8WJL2_GEOS8
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_solids1_trim150_scaffold_16_65
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67047..68303
DNA (1257bp) protein (419aa)
UPI0003CFDB56 related cluster n=1 Tax=unknown RepID=UPI0003CFDB56 rbh
Membrane protein {ECO:0000313|EMBL:ESZ36653.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_16_66
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68391..68996
DNA (606bp) protein (202aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL11_9RHIZ
scnpilot_solids1_trim150_scaffold_16_67
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69010..69393
DNA (384bp) protein (128aa)
Endoribonuclease L-PSP n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL10_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:EHK58593.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
endoribonuclease L-PSP
scnpilot_solids1_trim150_scaffold_16_68
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69498..70610
DNA (1113bp) protein (371aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
UPI0003D00954 related cluster n=1 Tax=unknown RepID=UPI0003D00954 rbh
3-isopropylmalate dehydrogenase rbh
scnpilot_solids1_trim150_scaffold_16_69
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70683..71318)
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8THV3_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV10098.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids1_trim150_scaffold_16_70
unknown

Not on your lists

71665..71796
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_16_71
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71909..72943
DNA (1035bp) protein (345aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] rbh
Aspartate-semialdehyde dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2NV92_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_16_72
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72979..73632)
DNA (654bp) protein (218aa)
Methyltransferase protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLF6_9RHIZ rbh
Methyltransferase protein {ECO:0000313|EMBL:EHK58485.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative methyltransferase rbh
scnpilot_solids1_trim150_scaffold_16_73
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73639..74064)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLF5_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58484.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_16_74
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74075..74371)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F5BC4
YciI-like protein {ECO:0000313|EMBL:EHK58483.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_16_75
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74435..75421)
DNA (987bp) protein (329aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MDS2_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_16_76
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(75418..76503)
DNA (1086bp) protein (362aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphapr
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y6V0_9RHIZ
putative glycoprotease GCP
scnpilot_solids1_trim150_scaffold_16_77
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76608..77531
DNA (924bp) protein (308aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hemC; porphobilinogen deaminase; K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Porphobilinogen deaminase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BZM9_9RHIZ
scnpilot_solids1_trim150_scaffold_16_78
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77538..78251
DNA (714bp) protein (238aa)
uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen III synthase HEM4 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DF2_MESSB
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:CDX52397.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
scnpilot_solids1_trim150_scaffold_16_79
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78381..79733
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EE853
Putative phage tail protein {ECO:0000313|EMBL:CDX22895.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
phage tail protein
scnpilot_solids1_trim150_scaffold_16_80
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79738..81450
DNA (1713bp) protein (571aa)
HemY domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLE8_9RHIZ
HemY domain-containing protein {ECO:0000313|EMBL:EHK58477.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative membrane-bound protein
scnpilot_solids1_trim150_scaffold_16_81
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81572..82057
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000304919A
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58476.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_16_82
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82264..82575
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y8Q2_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY79262.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
scnpilot_solids1_trim150_scaffold_16_83
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82602..82988)
DNA (387bp) protein (129aa)
UPI0003CFCF2E related cluster n=1 Tax=unknown RepID=UPI0003CFCF2E
Uncharacterized protein {ECO:0000313|EMBL:ESZ06255.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
Protein of unknown function (DUF2794)
scnpilot_solids1_trim150_scaffold_16_84
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83569..84783)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036A104B rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFF48595.1}; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
branched-chain amino acid ABC transporter, amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
scnpilot_solids1_trim150_scaffold_16_85
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85039..85452)
DNA (414bp) protein (138aa)
Endoribonuclease L-PSP n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HNS0_9RHIZ
Endoribonuclease L-PSP {ECO:0000313|EMBL:EHK57615.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
endoribonuclease L-PSP
scnpilot_solids1_trim150_scaffold_16_86
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85470..86156)
DNA (687bp) protein (229aa)
High-affinity branched-chain amino acid transport ATP-binding protein LivF (LIV-I protein F) n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMR7_9RHIZ rbh
High-affinity branched-chain amino acid transport ATP-binding protein LivF (LIV-I protein F) {ECO:0000313|EMBL:EKF19084.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
livF; High-affinity branched-chain amino acid transport ATP-binding protein LivF (LIV-I protein F); K01996 branched-chain amino acid transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_16_87
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86153..86905)
DNA (753bp) protein (251aa)
Branched-chain amino acid ABC transporter, ATP-binding component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEA6_9RHIZ
Branched-chain amino acid ABC transporter, ATP-binding component {ECO:0000313|EMBL:EKF19085.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter related; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_16_88
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86898..87884)
DNA (987bp) protein (329aa)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2P332_9RHIZ rbh
High-affinity branched-chain amino acid transport system permease protein LivM (LIV-I protein M) {ECO:0000313|EMBL:KFB08199.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_16_89
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87877..88797)
DNA (921bp) protein (307aa)
High-affinity branched-chain amino acid transport system permease protein LivH (LIV-I protein H) n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BQJ0_9RHIZ rbh
High-affinity branched-chain amino acid transport system permease protein LivH (LIV-I protein H) {ECO:0000313|EMBL:EIM71842.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_16_90
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89055..90191)
DNA (1137bp) protein (379aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000376AF41 rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EKF41788.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter substrate binding protei; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Displaying items 61-90 of 245 in total

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