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scnpilot_solids1_trim150_scaffold_165

Search features with annotation key words

Displaying items 121-150 of 155 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_165_121
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

135290..136588
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGV5_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHH08485.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_165_122
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

136983..139274
DNA (2292bp) protein (764aa)
CRISPR-associated helicase, Cas3 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR90_NITWN rbh
CRISPR-associated helicase Cas3; K07012 rbh
CRISPR-associated helicase, Cas3 family {ECO:0000313|EMBL:ABA05201.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids1_trim150_scaffold_165_123
unknown

Not on your lists

139291..139533
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_165_124
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139590..140282
DNA (693bp) protein (231aa)
CRISPR-associated protein, Csd5d family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR91_NITWN rbh
CRISPR-associated Csd1 family protein rbh
CRISPR-associated protein, Csd5d family {ECO:0000313|EMBL:ABA05200.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids1_trim150_scaffold_165_125
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140279..142072
DNA (1794bp) protein (598aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR92_NITWN rbh
CRISPR-associated Csd1 family protein rbh
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ABA05199.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids1_trim150_scaffold_165_126
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

142072..143025
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR93_NITWN rbh
CRISPR-associated Csh2 family protein rbh
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ABA05198.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids1_trim150_scaffold_165_127
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143030..143698
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKZ8_9RHIZ
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EYR78098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07464 putative RecB family exonuclease rbh
scnpilot_solids1_trim150_scaffold_165_128
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143695..144729
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR95_NITWN rbh
hypothetical protein; K15342 CRISP-associated protein Cas1 rbh
scnpilot_solids1_trim150_scaffold_165_129
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144732..145022
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQF5_9RHIZ
hypothetical protein
scnpilot_solids1_trim150_scaffold_165_130
unknown

Not on your lists

145696..146445
DNA (750bp) protein (250aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_165_131
unknown

Not on your lists

148070..149626
DNA (1557bp) protein (519aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_165_132
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

150356..151321
DNA (966bp) protein (322aa)
Integrase catalytic region n=1 Tax=Rhizobium sp. RepID=L0NIG3_RHISP rbh
Integrase catalytic region {ECO:0000313|EMBL:CCF20885.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
integrase rbh
scnpilot_solids1_trim150_scaffold_165_133
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

151363..152241
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGV2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDX30652.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_165_134
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

152809..154275
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DHK4_BRAJP rbh
Integrase {ECO:0000313|EMBL:KGT75310.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_165_135
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154304..154675
DNA (372bp) protein (124aa)
UPI0003D0273B related cluster n=1 Tax=unknown RepID=UPI0003D0273B
Uncharacterized protein {ECO:0000313|EMBL:ESZ21360.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_165_136
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154675..155070
DNA (396bp) protein (132aa)
UPI0003CF35F3 related cluster n=1 Tax=unknown RepID=UPI0003CF35F3
XRE family transcriptional regulator {ECO:0000313|EMBL:ESX84805.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_165_137
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(155395..155850)
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2P2A5_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EKF44239.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
AsnC family transcriptional regulator
scnpilot_solids1_trim150_scaffold_165_138
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

155986..158373
DNA (2388bp) protein (796aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transketolase domain-containing protein; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1] rbh
Transketolase central region n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I144_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_165_139
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158455..158682)
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHJ54599.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
scnpilot_solids1_trim150_scaffold_165_140
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158685..159845)
DNA (1161bp) protein (387aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=F8BJW8_OLICM
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05268.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_141
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(159842..160834)
DNA (993bp) protein (331aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV6_OLICO rbh
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:AEI05267.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_142
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(160831..161520)
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV7_OLICO rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AEI05266.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_143
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(161517..162863)
DNA (1347bp) protein (449aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV8_OLICO
trbL2; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AEI05265.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_144
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(162863..163153)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV9_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05264.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_145
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163177..163938)
DNA (762bp) protein (254aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Oligotropha carboxidovorans RepID=B6JJW0_OLICO
trbJ2; P-type conjugal transfer protein TrbJ
P-type conjugal transfer protein TrbJ {ECO:0000313|EMBL:AEI05263.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_146
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163935..166391)
DNA (2457bp) protein (819aa)
Conjugal transfer protein trbE n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW1_OLICO
trbE2; conjugal transfer protein trbE; K03199 type IV secretion system protein VirB4
Conjugal transfer protein trbE {ECO:0000313|EMBL:AEI05262.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_147
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166401..166682)
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW2_OLICO
hypothetical protein; K03198 type IV secretion system protein VirB3
Uncharacterized protein {ECO:0000313|EMBL:AEI05261.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_148
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(166682..167014)
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW3_OLICO
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Uncharacterized protein {ECO:0000313|EMBL:AEI05260.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids1_trim150_scaffold_165_149
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(167011..167994)
DNA (984bp) protein (328aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB2_9SPHN rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ENY79945.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
trbB2; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
scnpilot_solids1_trim150_scaffold_165_150
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168047..168379)
DNA (333bp) protein (111aa)
UPI0003CF74B6 related cluster n=1 Tax=unknown RepID=UPI0003CF74B6
Integrase {ECO:0000313|EMBL:ESY19463.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
Putative transposase,probably encoded by an unidentified IS element protein
Displaying items 121-150 of 155 in total

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