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scnpilot_solids1_trim150_scaffold_30_1

Organism: SCNPILOT_SOLID_1_TRIM150_Rhizobiales_63_14

near complete RP 51 / 55 MC: 4 BSCG 51 / 51 MC: 3 ASCG 11 / 38
Location: comp(394..2472)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Hoeflea sp. 108 RepID=UPI00037F0C24 similarity UNIREF
DB: UNIREF100
  • Identity: 90.8
  • Coverage: 676.0
  • Bit_score: 1178
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.0
  • Coverage: 676.0
  • Bit_score: 1168
  • Evalue 0.0
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 89.3
  • Coverage: 680.0
  • Bit_score: 1159
  • Evalue 0.0
  • rbh

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Taxonomy

Pseudomonas bauzanensis → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2079
ATGGGTGAAACGGGCGCACAGGCCGAATGGCCCTTGGAGAAGCAAAGCATGGCGACAAAGGAAAAGGAAGAGGTCGAGACCGAACGCGAGGCGACGACGGACGGCCCTCTGCTCGACCTTTCCGACGACGCGGTCAAGAAGATGATCAAGGTCGCGAAGAAGCGCGGCTATGTCACGATGGACGAACTGAATTCGGTCCTGCCTTCCGAGGAAGTCACGTCGGAGCAGATCGAGGATACGATGGCGATGCTCTCCGACATGGGCATCAATGTCGTCGAGGACGACGAGACGACCGAGGAGCCCGAGGCGGACGCTGCTGAAAGCGAGGAAGACGCCAAGGAAATCGCCGAGCAGAACGGCACGGCGGTCGCCGCCGCCCCGGCGAAGAAGGAGCCCACCGACCGTACCGACGATCCGGTGCGCATGTATCTGCGCGAGATGGGCTCGGTCGAGCTTCTGTCGCGCGAGGGCGAGATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAGACCATGATCGCTGGCCTGTGCGAAAGCCCGCTGACCTTCCAGGCCATCATCATCTGGCGCGACGAACTGAACGAGGCGAAGATCCTGCTGCGCGAGATCATCGATCTCGAGGCGACCTATGCCGGCCCGGAGGCCAAGCAGGCGCCGGTCGTCGTGCGTTCGGAAGAGGCCAACGGCAAGCCGCAGGAAGAAGAACCGCGCAACGGCCGCCGCCCAACGGGCCGTGAAGACGACGACATCACCAATGTCGGCGGCGAAAACCGCTCCGAAGAGGACGACGAGGAAGAGGACGAGGCCAATTTGTCGCTGGCCGCCATGGAAGCGGAACTGCGTCCGCAGGTCATGGAGACGCTGGACGTCATCGCCGATACCTACAAGCGGCTGCGCAAGCTGCAGGACCAGCAGGTGGAGAACCGTCTCGCCGCCGCCGGCACGCTGTCGCCCAGCCAGGAGCGCCGCTACAAGGAACTGAAGGAACAGCTCATCAAGGCGGTGAAGTCGCTGTCGCTCAACAATGCCCGCATCGAGGCGCTGGTCGAGCAGCTTTACGACATCAACAAGCGCCTGGTGCAGAACGAGGGCAGGCTTTTGCGGCTGGCCGAAAGCTACGGCGTTCGCCGCGACAATTTCCTCGAAGTCTATCAGGGCTCCGAGCTCGATCCCAACTGGATGAAGTCGGTTTCCAACCTGTCTGCCCGCGGCTGGAAGGAATTCACCAAGGGCGAGAAGGAAAAGATCCGCGACATCCGCTCCGAGATCCAGAATCTCGCCACCGAAACCGGCATCTCGATCGCCGAATTCCGCAAGATCGTCAACCAGGTCCAGAAGGGCGAGCGCGAGGCGGCGATCGCCAAGAAGGAGATGGTGGAGGCCAATCTGCGTCTCGTCATCTCGATTGCCAAGAAATACACGAACCGCGGCCTGCAATTCCTTGATCTCATTCAGGAAGGCAATATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGTACCGCCGCGGCTACAAGTTCTCCACCTATGCGACGTGGTGGATCAGGCAGGCGATCACCCGTTCGATCGCCGATCAGGCGCGCACCATCCGCATCCCGGTCCACATGATCGAGACGATCAACAAGATCGTGCGTACCTCGCGCCAGATGCTGCACGAGATCGGCCGCGAGCCGACGCCGGAGGAACTGGCCGAAAAGCTCGCAATGCCGCTCGAAAAGGTGCGCAAGGTGCTGAAGATCGCCAAGGAGCCGATCAGCCTCGAAACGCCGGTCGGCGACGAGGAGGATAGTCATCTCGGCGACTTCATCGAAGACAAGGGCGCGATCCTGCCGATCGACGCGGCCATCCAGGCCAATCTGCGCGAGACGACGACGCGGGTGCTGGCTTCGCTCACGCCGCGCGAGGAGCGCGTGCTCAGAATGCGCTTCGGCATCGGCATGAACACCGACCACACGCTGGAGGAGGTCGGCCAGCAATTCTCGGTGACACGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTCAGGAAGCTCAAGCACCCGAGCCGGTCGAGGAAGCTCAGGAGCTTCCTGGACAGCTAA
PROTEIN sequence
Length: 693
MGETGAQAEWPLEKQSMATKEKEEVETEREATTDGPLLDLSDDAVKKMIKVAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVVEDDETTEEPEADAAESEEDAKEIAEQNGTAVAAAPAKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEAKILLREIIDLEATYAGPEAKQAPVVVRSEEANGKPQEEEPRNGRRPTGREDDDITNVGGENRSEEDDEEEDEANLSLAAMEAELRPQVMETLDVIADTYKRLRKLQDQQVENRLAAAGTLSPSQERRYKELKEQLIKAVKSLSLNNARIEALVEQLYDINKRLVQNEGRLLRLAESYGVRRDNFLEVYQGSELDPNWMKSVSNLSARGWKEFTKGEKEKIRDIRSEIQNLATETGISIAEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKGAILPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS*