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scnpilot_solids1_trim150_scaffold_250_7

Organism: SCNPILOT_SOLID_1_TRIM150_Burkholderiales_66_126

near complete RP 51 / 55 MC: 1 BSCG 48 / 51 ASCG 13 / 38
Location: comp(7114..7401)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=2 Tax=Alicycliphilus denitrificans RepID=E8TWW8_ALIDB similarity UNIREF
DB: UNIREF100
  • Identity: 92.0
  • Coverage: 88.0
  • Bit_score: 163
  • Evalue 1.40e-37
RNA chaperone Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 92.0
  • Coverage: 88.0
  • Bit_score: 163
  • Evalue 4.50e-38
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.0
  • Coverage: 88.0
  • Bit_score: 163
  • Evalue 2.00e-37

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Taxonomy

Alicycliphilus denitrificans → Alicycliphilus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 288
GTGGCGCCCCACAACAACAGTTTGAACACGGAGCATATCGTGAGCAACAAAGGCCAACTTCTCCAAGACCCGTTCCTGAACGCGCTGCGTCGCGAACATGTGCCGGTGTCTATTTATCTTGTGAATGGCATCAAGCTGCAGGGCCAGATCGAATCCTTCGATCAGTATGTCGTGCTGCTGCGCAATACCGTGACTCAAATGGTGTACAAGCATGCCATCTCGACCATCGTGCCGGGGCGTGCCGTTAATTTTGCCGCTGCTGAATCCGCCGATGGAGGCGATCAATAA
PROTEIN sequence
Length: 96
VAPHNNSLNTEHIVSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFAAAESADGGDQ*