ggKbase home page

scnpilot_solids1_trim150_scaffold_178_10

Organism: SCNPILOT_SOLID_1_TRIM150_Stenotrophomonas_70_20

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: comp(10763..11746)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.5
  • Coverage: 328.0
  • Bit_score: 548
  • Evalue 5.80e-153
rluD; putative ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 80.7
  • Coverage: 326.0
  • Bit_score: 539
  • Evalue 6.00e-151
  • rbh
23S rRNA pseudouridine synthase D n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000307B200 similarity UNIREF
DB: UNIREF100
  • Identity: 84.7
  • Coverage: 326.0
  • Bit_score: 547
  • Evalue 7.00e-153
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas rhizophila → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 984
ATGTCCGACAACGCTTCCCTTCCTTCCCGCCAGGCGCGGGTGCCCGACGCCGCCGCCGGCCGCCGTTTCGACGCGGTGCTGGCCGAGCTGTTCCCCGAATTCTCCCGTTCCCGCCTGAGCGAATGGATCAAGTCCGGGGCGGCGCTGCTCGACGGCGTCCCGGCCCGTCCGCGCGATCCGGTGCGCGGCGGCGAGCTGGCGATCCTGAATGCGACGCTGGACACCGAGACCGACGCCATCCCCGAGGACATCCCGCTGTCGGTCCTGTACGAGGACGAGCATGTCTTCGTGATCGACAAGCCGGCCGGGCTGGTGGTCCACCCGGGGGCCGGCAACCCCACCGGTACCCTGGTCAACGCGCTGCTGTTCCGCGACCCGTCGCTGGCATCGGTGCCGCGCGCCGGCGTGGTCCACCGGCTGGACAAGGACACCAGCGGGGTGATGGTCGTGGCCCGCACCCTGCAGGCGCAGACCGCGCTGGTGGAGCAGTTGTCCGCGCGCGAGGTGCACCGCCAGTACCTGGCCGTGGTGAGCGGCGCGCTGGTGTCCGGCGGCACCGCCGATGCGCCGATCGACCGCCACCCGCGCGACCGCCTGCGCATGGCCGTGCGCGAGGACGGCCGCGATGCGGTCACCCATTACCGCCTGCGCGAGCGCTTCCGCGCCCATACCGCGCTGGAATGCCGGCTGGAAACCGGCCGTACCCACCAGATCCGCGTGCACATGGCGCACCTGAAGCACCCGATCATCGGCGACCCGCTCTACGGCGGCGCGCTGAAGCTGCCCAAGGGCGCCACCGACGAACTGGTTTCGCAGCTGCGCGGCTTCAAGCGCCAGGCGCTGCACGCCGAGACGCTGGAATTCACGCACCCGATCACCGGCGAGGCGATCCGCAACAGCGCGCCGGTGCCGGCCGACATGCTGGCGCTGATGAAGGCGCTGCGCGAGGACAGCATCCTGTTCGCCGAACGCGAGCGGCGCTGA
PROTEIN sequence
Length: 328
MSDNASLPSRQARVPDAAAGRRFDAVLAELFPEFSRSRLSEWIKSGAALLDGVPARPRDPVRGGELAILNATLDTETDAIPEDIPLSVLYEDEHVFVIDKPAGLVVHPGAGNPTGTLVNALLFRDPSLASVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSAREVHRQYLAVVSGALVSGGTADAPIDRHPRDRLRMAVREDGRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKHPIIGDPLYGGALKLPKGATDELVSQLRGFKRQALHAETLEFTHPITGEAIRNSAPVPADMLALMKALREDSILFAERERR*