ggKbase home page

scnpilot_solids1_trim150_scaffold_48

Search features with annotation key words

Displaying items 31-60 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_48_31
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32508..33260)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00036B8DF3 rbh
dolichyl-phosphate mannose synthase
Uncharacterized protein {ECO:0000313|EMBL:AGW40721.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
scnpilot_solids1_trim150_scaffold_48_32
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33269..35194)
DNA (1926bp) protein (642aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YYT9_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:KJQ53652.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_48_33
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(35191..35925)
DNA (735bp) protein (245aa)
Polysaccharide ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YRG6_9MICO rbh
wzt; putative polysaccharide ABC transporter ATP-binding protein; K09691 lipopolysaccharide transport system ATP-binding protein rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids1_trim150_scaffold_48_34
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(35922..36857)
DNA (936bp) protein (312aa)
Polysaccharide/polyol phosphate ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XRJ9_9MICO rbh
ABC transporter; K09690 lipopolysaccharide transport system permease protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids1_trim150_scaffold_48_35
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36976..39273)
DNA (2298bp) protein (766aa)
hypothetical protein n=1 Tax=Agromyces subbeticus RepID=UPI0003B4A79B rbh
FG-GAP repeat protein {ECO:0000313|EMBL:KJQ53649.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hemagglutinin-related protein
scnpilot_solids1_trim150_scaffold_48_36
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39552..40625)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00036712A9 rbh
Glycosyl transferases group 1 {ECO:0000313|EMBL:KJQ53648.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
glycosyltransferase rbh
scnpilot_solids1_trim150_scaffold_48_37
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40793..42496
DNA (1704bp) protein (568aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F1807F rbh
Uncharacterized protein {ECO:0000313|EMBL:KJQ53647.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_48_38
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42636..43190
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003465A77
Uncharacterized protein {ECO:0000313|EMBL:KJL28423.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
scnpilot_solids1_trim150_scaffold_48_39
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(43314..44771)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002FBF2F4 rbh
Biofilm regulatory protein A {ECO:0000313|EMBL:KJL28424.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_48_40
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44768..45283)
DNA (516bp) protein (172aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003464CD9 rbh
scnpilot_solids1_trim150_scaffold_48_41
unknown

Not on your lists

comp(45341..45658)
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_48_42
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(45655..45909)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7B6H2_NOCDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH69259.1}; TaxID=446468 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
scnpilot_solids1_trim150_scaffold_48_43
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(45940..47064)
DNA (1125bp) protein (375aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Mi
purK; phosphoribosylaminoimidazole carboxylase; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] rbh
phosphoribosylaminoimidazole carboxylase n=1 Tax=Microbacterium barkeri RepID=UPI0002E64099 rbh
scnpilot_solids1_trim150_scaffold_48_44
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(47126..47638)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F57418
Uncharacterized protein {ECO:0000313|EMBL:EQM75281.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_48_45
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(47744..48532)
DNA (789bp) protein (263aa)
Bifunctional ligase/repressor BirA {ECO:0000313|EMBL:KJL28428.1}; EC=6.3.4.15 {ECO:0000313|EMBL:KJL28428.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
biotin-(acetyl-CoA carboxylase) ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F5597D
scnpilot_solids1_trim150_scaffold_48_46
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(48532..49821)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F8D842 rbh
Contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88407.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
glycosyl/glycerophosphate transferase rbh
scnpilot_solids1_trim150_scaffold_48_47
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

49969..51006
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000375509C rbh
N-glycosyltransferase {ECO:0000313|EMBL:KJL28430.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
glycosyltransferase rbh
scnpilot_solids1_trim150_scaffold_48_48
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(51035..52510)
DNA (1476bp) protein (492aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D362AD rbh
glycosyl/glycerophosphate transferase rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids1_trim150_scaffold_48_49
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(52507..53760)
DNA (1254bp) protein (418aa)
Putative CDP-glycerol:glycerophosphate glycerophosphotransferase {ECO:0000313|EMBL:KJL24019.1}; EC=2.7.8.- {ECO:0000313|EMBL:KJL24019.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000345C29D rbh
glycosyl/glycerophosphate transferase rbh
scnpilot_solids1_trim150_scaffold_48_50
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(53811..55355)
DNA (1545bp) protein (515aa)
Periplasmic serine endoprotease DegP {ECO:0000313|EMBL:KJL24018.1}; EC=3.4.21.107 {ECO:0000313|EMBL:KJL24018.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; K08372 putative serine protease PepD [EC:3.4.21.-]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000364F36C rbh
scnpilot_solids1_trim150_scaffold_48_51
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

55411..56652
DNA (1242bp) protein (414aa)
Putative N-succinyldiaminopimelate aminotransferase DapC {ECO:0000313|EMBL:KJL28434.1}; EC=2.6.1.17 {ECO:0000313|EMBL:KJL28434.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
aspartate/tyrosine/aromatic aminotransferase; K14267 N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] rbh
aminotransferase n=1 Tax=Microbacterium barkeri RepID=UPI0002F142F1 rbh
scnpilot_solids1_trim150_scaffold_48_52
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(56749..57549)
DNA (801bp) protein (267aa)
2-oxoglutaramate amidase {ECO:0000313|EMBL:KJL27459.1}; EC=3.5.1.111 {ECO:0000313|EMBL:KJL27459.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344E958 rbh
amidohydrolase rbh
scnpilot_solids1_trim150_scaffold_48_53
Mycobacterium indicus pranii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

57615..57959
DNA (345bp) protein (115aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1232724 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium indicus pranii MTCC 9506.;"
alkylhydroperoxidase n=1 Tax=Glaciibacter superstes RepID=UPI0003B687CD
hypothetical protein
scnpilot_solids1_trim150_scaffold_48_trna_1
unknown

Not on your lists

comp(58017..58090)
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_48_54
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(58183..61098)
DNA (2916bp) protein (972aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000372F12F rbh
hypothetical protein; K09118 hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids1_trim150_scaffold_48_55
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(61159..62253)
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F5507C rbh
Uncharacterized protein {ECO:0000313|EMBL:EYT61179.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
secreted protein containing a PDZ domain; K07177 PDZ domain-containing protein
scnpilot_solids1_trim150_scaffold_48_56
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

62370..63821
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347A3D7 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYT61180.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_48_57
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

64030..64896
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00037DA4CD
Uncharacterized protein {ECO:0000313|EMBL:KJL18158.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_48_58
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(64733..66451)
DNA (1719bp) protein (573aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
superfamily I DNA and RNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KPL2_9MICO rbh
scnpilot_solids1_trim150_scaffold_48_59
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66448..67344)
DNA (897bp) protein (299aa)
NADH pyrophosphatase {ECO:0000313|EMBL:KJL28442.1}; EC=3.6.1.22 {ECO:0000313|EMBL:KJL28442.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
NTP pyrophosphohydrolase containing a Zn-finger, probably nucleic-acid-binding; K03426 NAD+ diphosphatase [EC:3.6.1.22]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000369B828 rbh
Displaying items 31-60 of 139 in total

View Taxonomy