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scnpilot_solids1_trim150_scaffold_11_259

Organism: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(271383..272039)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=Microbacterium barkeri RepID=UPI0002D4FC3C similarity UNIREF
DB: UNIREF100
  • Identity: 80.7
  • Coverage: 218.0
  • Bit_score: 355
  • Evalue 4.40e-95
  • rbh
RNA polymerase subunit sigma-54 {ECO:0000313|EMBL:EYT59672.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.7
  • Coverage: 218.0
  • Bit_score: 359
  • Evalue 3.30e-96
ribosome-associated protein Y (PSrp-1) similarity KEGG
DB: KEGG
  • Identity: 75.9
  • Coverage: 220.0
  • Bit_score: 330
  • Evalue 3.70e-88

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Taxonomy

Microbacterium sp. UCD-TDU → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 657
ATGGAAACGAGCATCATCGGCGTCGGAGTGAGCATCTCCGACCGGTTCCGCACGGTTGTCGAGGAGAAGACGGCGCGGATCCAGACGCTCGCGCCGCGGGCGCTCCGACTCGAGATCAAGGTCACGCATCGTGCGTATCGCAACGGGCGGGTTCCTGACGAGACGGTCGAGCTCACGCTGCTCGGCAAGGGTCCCGTGATCCGCGCGGAGGCTGTCGATGCTGACAAGTTCACTGCGCTGGATCTGGCGCTCGACAAGCTCACCGAGCAGCTGCGTCGCGCGAAGGAGAAGCGGATCGACGCGCGCAACCAGGCCCGCGGCGCGCACTTCGAGAAGGGCAGCGGCGCGCTGACCGGGATCGACGTGCAGCCCGCATCCGCCGACGTGCTCCGCGCCGTCGCGACCGGGGCCATCCCCGTGCTCGAGGACGAGGAGGAGGTGTACACGCCGGTCGTCATCCGCACGAAGAACTTCGATGCCGAGTGGATGACAGTCGAGGAGGCCGTCGACCGCATGGAGCTGGTCGGGCACGACTTCTTCCTGTTCGTGGATGCCCGCACCGACCACCCCAGCGTGGTCTACCGCCGCAAGGGCTGGGACTACGGCGTGATCTCGCTGACCACGGCGGCTCCGCCCGCGGAGGCACTGGCGTCCTGA
PROTEIN sequence
Length: 219
METSIIGVGVSISDRFRTVVEEKTARIQTLAPRALRLEIKVTHRAYRNGRVPDETVELTLLGKGPVIRAEAVDADKFTALDLALDKLTEQLRRAKEKRIDARNQARGAHFEKGSGALTGIDVQPASADVLRAVATGAIPVLEDEEEVYTPVVIRTKNFDAEWMTVEEAVDRMELVGHDFFLFVDARTDHPSVVYRRKGWDYGVISLTTAAPPAEALAS*