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scnpilot_solids1_trim150_scaffold_83_91

Organism: SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(85565..89104)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.8
  • Coverage: 999.99
  • Bit_score: 1983
  • Evalue 0.0
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 76.0
  • Coverage: 999.99
  • Bit_score: 1777
  • Evalue 0.0
  • rbh
transcription-repair coupling factor n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000345EBA5 similarity UNIREF
DB: UNIREF100
  • Identity: 84.3
  • Coverage: 999.99
  • Bit_score: 1962
  • Evalue 0.0
  • rbh

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Taxonomy

Microbacterium oxydans → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3540
GTGACTGTTCCGGGGATTCTGCGCGCCTTGGAAGAGGCGAACCTGTACCGCGATGCCCTCACCTGGGCGCAGACCGATGGCGAGATCTCGGTGGTCGACGGGCTCGACGCCCCGGTCATCGCCGGGCTGCTGACCAAGCGCGCACAGGCGGGCCACCCGGCATCCGCTCTGGTCGTCACCCCGACCGGCCGCCGGGCCGAGTCCGTGGCGGCGGCGCTGGGCACCTACCTGGCGGATGCCGAGATCCTCACCTTCCCCGCCTGGGAGACGCTGCCGCACGAGCGCCTGAGCCCCAGCCCCGACACCGTCGGGCGGCGCCTGGCCACGCTGCGCCGCATCACCACCTGGGACGGCTCCACGCCGCTGATCGTGGTGGCCTCGGTCCGGGCGGCGCTGCAGCCGGTGGCCGCGAACCTGGGTGACGCCGCACCTCTCGAACTGCGGCTCGGCGGTCGAGGGATCGAGCTCGAGGATGCCGTGGAGCAGCTCGTCGAGCGCGCGTACTCCCGCGTCGACATGGTGTCCCGCCGTGGTGAGTTCGCCGTGCGCGGCGGCATCCTGGACGTCTTCCCGCCGACGTCCGATCATCCTGCGCGGGTGGAGTTCTTCGGTGACGAGGTCGATCAGATCCGGGCCTTCTCGGTGGCCGACCAGCGCTCGCTGCCGGGCGATGTCGCCTCGGTCGAGCTGCCCGCCAGCCGCGAGCTGCTGCTGACCGCCGAGGTGCGCGAGCGCGCCGCTGCGCTCGTGAGCGCGTTCCCCGCCATCTCCGGGATGCTGGAGAAGATGGCCGAGGGCATCCCGGTCGAGGGCATGGAGTCGCTGCTGCCTGCTGTCGCGGGTCCGCTGGTGACCCTGGCCGAGTACCTGCCGGAGGGTTCGGCCACGGCCATCGTCGACCCGGAGCGCGCGAGCGCCCGCGCGCAGAACCTCGGCGAGACCAACCGGGAGTTCCTGGAAGCCGCGTGGAGCGCCGCGACCTCGGGCGCCTCCGCGCCCATCGACCTCGACGCAGGCGACTTCATCTCCATCGCCCGGCTGCGTGAGATCGTCCGCGGGCGCGACGGCGTGTGGTGGCGATTGAGTGCGTTCGCCACGGATGACGCGGATGCCGCGAACCTGGACTCGTCGATCATCCCGTCGTTCCACGGGAACGTCGACGGCGCCGTCTCCTTCGTGCAGGCTCGCCTGGGCGAGGGCTGGCGCGTGGTCGTCGTCGCCTCCGGGCAGGGGCTGGTCGAGCGCGCACGTGATGTGCTCAGCGACCGCGGCATGGCGGCCAGAGTGCTCGAGGATCTCGCCGAGGCTCCGGATGCCGGTGTCGCGACGCTTGTGGTCGGAGCCGTGGAGTCCGGCTTCCAGGTGCCCGAGGCGAAGCTGGCGGTGCTCACCGACAGCGAGTTCTACGGCCGCACCATCGGCGGCGACCAGCGGGTCGTCAAGAAGCTGGCCTCGCGCCGGCGCAACGTCGTCGATCCGCTGCAGCTGAAGCAGGGCGACTACGTCGTGCACATCACGCACGGCATCGGCCGGTTCGTGGAGATGACCAAGCGCGAGGTGTCCTCCGGCGGCCGGCACGCCGTCAAGTCGACGCGCGAGTACCTGGTGCTCGAGTACGCGCCGTCCAAGCGCGGGTACCCGGGCGACAAGCTGTACGTACCCACCGACCAGCTGGACCTGTTGTCGAAGTATGTCGGCGGCGAGGCGCCCGCGCTGTCGAAGATGGGCGGCAGCGACTGGTCGGCAGCCAAGGGCAAGGCCCGCAAGGCCGTGCGTGACATCGCCGTCGAGCTGGTCAAGCTGTACTCCGCACGCGTGAACTCGAAGGGGTACGCGTTCGGGCCGGACACCCCCTGGCAGCGCGAGCTGGAGGAGGCGTTCCCGTTCGCCGAGACGCACGACCAGCTGCAGACCATCGACGAGATCAAGGCCGACATGGAACGGCCGATCCCGATGGACCGGCTGCTGTCGGGAGATGTCGGCTTCGGCAAGACCGAAGTGGCCGTGCGGGCCGCGTTCAAGGCCATCCAGGAGGGCAAGCAGGTCGCCATGCTCGTGCCGACCACTCTGCTGGTCAAGCAGCACATGGAGACCTTCACCGAGCGCTTCGCCGGCTTCCCCGTGAAGGTGCGTCCGCTCTCGCGCTTCCAGACCGACAAAGAGGCCCGGCTCACCCTGCAGGGGCTCGTCGACGGATCGGTCGACATGGTCATCGGCACGCACCGCATCCTCACCGATCAGGTGATCTTCAAGGACCTGGGTCTGATGATCATCGACGAGGAGCAGCGCTTCGGCGTGGAGCACAAGGACGCGCTGAAGAAGATGAAGACCAACGTCGACATCCTCGCCATGAGCGCGACGCCCATCCCGCGCACGCTGGAGATGGCGGTCACCGGCATCCGCGAGATGTCCACCCTGCAGACGCCGCCGGAGGACCGGCATCCGATCCTCTCCTTCGTCGGACCCCGCAGCGACAAGCAGATCGCCGCGGCGATCCGCCGCGAGATCCTGCGCGAGGGCCAGGTGTTCTTCGTGCACAACCGTGTGCAGTCCATCCAGCGGGTGGCGTCCGAGCTGGCGGAGCTGGTGCCCGAGGCGCGCATCGCCGTCGCGCACGGCAAGATGGGCGAGCACCAGCTGGAGCAGGTCGTCGACGACTTCTGGGAGCGCAAGTACGACGTGCTGGTCTCGACGACCATCATCGAGACGGGCCTGGACATCTCCAACGCCAACACGATCATCATCGACAGGGCCGACAAGTACGGTCTGTCGCAGCTGCACCAGCTGCGCGGACGCGTGGGCCGCGGGCGCGAGCGCGCGTACGCGTACTTCCTGTACGACGACGCCAAGCCGCTCTCGGAGACGGCCGCCGATCGGCTGCAGACCATCGCCGTGAACAACGAGCTGGGTTCGGGAATGCAGGTGGCGCTGAAGGACCTCGAGCTGCGCGGTGCCGGCAACCTGCTGGGTGCCGAGCAGGCCGGGCACATCGCCGGCGTCGGCTTCGACCTGTACCTGCGCATGATCGGCGAGGCCGTCGCCACGTTCCGCGGTGAGGACACCACCTCGGATGTCGAGCTGCGGCTGGAGCTGCCGGTGGATGCCAGGATTCCCGAGCACTACATCGACAGTGAGCGGCTGCGGCTGGAGGCGTATCAGAAGCTGTCATCCGCGGCCGGCGCCGGTGCGGCCGATGACGCGATCGACCTGGTCGCCGAGGAGCTCGTCGACCGCTACGGCGCACTGCCCGAGGAGGTGCAGACCCTGGTGACCGTCGCGCGGCTGCGCCGCCGTGCCGCGCGTGCGGGTCTGACGGATGTCGTGGCGATGGGCTCGAACCTGCGGGTCGCACCCGCGCGCCTCGCGGATTCCATGAAGGTGCGTCTTCAGCGCCTGTACCCGAAGGCGAAGCTGGTCGGCGGGGGAGAGGCGCTGGTGGTGCCGATGCCCACGGAATCTGACCTCATCGAGTGGGTCGGGAATCTGCTCACTGCCATGTTCCCGGAGCCCGTGAAGGAGCCCGCGGTCATTCAAGGCTGA
PROTEIN sequence
Length: 1180
VTVPGILRALEEANLYRDALTWAQTDGEISVVDGLDAPVIAGLLTKRAQAGHPASALVVTPTGRRAESVAAALGTYLADAEILTFPAWETLPHERLSPSPDTVGRRLATLRRITTWDGSTPLIVVASVRAALQPVAANLGDAAPLELRLGGRGIELEDAVEQLVERAYSRVDMVSRRGEFAVRGGILDVFPPTSDHPARVEFFGDEVDQIRAFSVADQRSLPGDVASVELPASRELLLTAEVRERAAALVSAFPAISGMLEKMAEGIPVEGMESLLPAVAGPLVTLAEYLPEGSATAIVDPERASARAQNLGETNREFLEAAWSAATSGASAPIDLDAGDFISIARLREIVRGRDGVWWRLSAFATDDADAANLDSSIIPSFHGNVDGAVSFVQARLGEGWRVVVVASGQGLVERARDVLSDRGMAARVLEDLAEAPDAGVATLVVGAVESGFQVPEAKLAVLTDSEFYGRTIGGDQRVVKKLASRRRNVVDPLQLKQGDYVVHITHGIGRFVEMTKREVSSGGRHAVKSTREYLVLEYAPSKRGYPGDKLYVPTDQLDLLSKYVGGEAPALSKMGGSDWSAAKGKARKAVRDIAVELVKLYSARVNSKGYAFGPDTPWQRELEEAFPFAETHDQLQTIDEIKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQEGKQVAMLVPTTLLVKQHMETFTERFAGFPVKVRPLSRFQTDKEARLTLQGLVDGSVDMVIGTHRILTDQVIFKDLGLMIIDEEQRFGVEHKDALKKMKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILSFVGPRSDKQIAAAIRREILREGQVFFVHNRVQSIQRVASELAELVPEARIAVAHGKMGEHQLEQVVDDFWERKYDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDAKPLSETAADRLQTIAVNNELGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGEDTTSDVELRLELPVDARIPEHYIDSERLRLEAYQKLSSAAGAGAADDAIDLVAEELVDRYGALPEEVQTLVTVARLRRRAARAGLTDVVAMGSNLRVAPARLADSMKVRLQRLYPKAKLVGGGEALVVPMPTESDLIEWVGNLLTAMFPEPVKEPAVIQG*