ggKbase home page

scnpilot_solids1_trim150_scaffold_2388_3

Organism: SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9

near complete RP 50 / 55 MC: 3 BSCG 49 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: comp(3440..4681)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor containing a TPR repeat domain n=1 Tax=Caulobacter sp. AP07 RepID=J3AM44_9CAUL similarity UNIREF
DB: UNIREF100
  • Identity: 62.8
  • Coverage: 406.0
  • Bit_score: 472
  • Evalue 6.20e-130
  • rbh
Putative RNA polymerase sigma factor containing a TPR repeat domain {ECO:0000313|EMBL:EJL33886.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.8
  • Coverage: 406.0
  • Bit_score: 472
  • Evalue 8.60e-130
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 60.6
  • Coverage: 406.0
  • Bit_score: 466
  • Evalue 1.10e-128
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Caulobacter sp. AP07 → Caulobacter → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1242
GTGGAACAGCGAGCAGTGAACGGCGCGCCACGCCACCGCGGCGACCTCGAGGACCTGCTGCGCGAGGCCGCGCCGCGGGTCCTCGCCGCGGTGGTGCGCCGCTTCGGCGACTTCGCCGACTCCGAGGACGCGGTCCAGGAGGCGATGATCGACGCGGCGCGCCAGTGGCCCGCGCAGGGCACGCCGGAGAGCCCGGCGGGGTGGCTGATCGCGGTGGCTTCGCGACGGATGACCGACCGGATCCGCGCCGATTCCGCACGGCGCGCGCGGGAGGAGCGGCTGGCCGTCGAACCGGAGCCCGGCCCCACGGCCGCGGCCGACGACACCCTGGCGCTGATCTTCATGTGCTGCCGGCCGGAGCTGACCCCGGCGTCGGCGGTCGCCCTCACGCTGCGCGCGGTCGGCGGCCTCTCGACCGCGCAGATCGCCGCCGCCTTCCTCGTCCCGGAGAAGACGATGGGACGGCGGATCGCCCGCGCCAGGCAGACGGTCGCCGCGGCCGCGGAGCCGTTCGGCCTCCCCGCCGGCGCGGAGCGCAAGGAGCGGCTGCGGACCGCGCTCTCGGTCCTCTACCTGATCTTCAACGAGGGCTACGCGGCGAGCGCGGGCCCCGACCTGGCGCGGACCGAGCTCTCCGCCGAGGCGATCCGGCTGACCCGGATCGCGCGGCTGGCACTGCCCGAGGAGCCCGAGGTCGGCGGCCTCCTGGCGCTGATGCTGCTGAGCGACGCGCGCCGCCCGGCCCGCACCGACGGGCGCGGCGAACTGGTGCCGCTGGACGAGCAGGACCGCTCGCGCTGGGACGCCGCGGCGATCGCGGAGGGCCTCCGGGTGCTGAACGAGGCGATCGCGGCGGGCGCCGTCGGTCCCTACCATCTGCAGGCCGCGATCGCCGCCGCCCACGACCGGGCGCGGCGCGCCGAGGACACCGACTGGGCCGAGATCCTCGCCCTCTACGGGCTGCTCGAAGGGGTCGCGCCGGGACCGATGGTGGCGCTGAACCGCGCCGTCGCGACGGCGATGGCCGACGGGCCGCGGGCGGGGCTCGACCTGCTCGCCGAGGTGGAGCCGCGGCTCGAAGGCCACCACCGCGTCCACGCGGTCCGCGCCCACCTGCTCGAGCTGGCAGGCGACTGGGCGGGCGCCCACGCCGAGTACGTGCGCGCCGCCGGGCTGACCGCGAGCCTGCCCGAGCAGCGTTACCTCACCAAGCGCGCGGCGCGCCTCGCGAGCGCCGCTTGA
PROTEIN sequence
Length: 414
VEQRAVNGAPRHRGDLEDLLREAAPRVLAAVVRRFGDFADSEDAVQEAMIDAARQWPAQGTPESPAGWLIAVASRRMTDRIRADSARRAREERLAVEPEPGPTAAADDTLALIFMCCRPELTPASAVALTLRAVGGLSTAQIAAAFLVPEKTMGRRIARARQTVAAAAEPFGLPAGAERKERLRTALSVLYLIFNEGYAASAGPDLARTELSAEAIRLTRIARLALPEEPEVGGLLALMLLSDARRPARTDGRGELVPLDEQDRSRWDAAAIAEGLRVLNEAIAAGAVGPYHLQAAIAAAHDRARRAEDTDWAEILALYGLLEGVAPGPMVALNRAVATAMADGPRAGLDLLAEVEPRLEGHHRVHAVRAHLLELAGDWAGAHAEYVRAAGLTASLPEQRYLTKRAARLASAA*