ggKbase home page

scnpilot_solids1_trim150_scaffold_1106_24

Organism: SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_40_703

near complete RP 49 / 55 MC: 2 BSCG 49 / 51 MC: 1 ASCG 12 / 38
Location: 26722..27156

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock DNA-binding protein family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SE90_PEDSD similarity UNIREF
DB: UNIREF100
  • Identity: 60.3
  • Coverage: 146.0
  • Bit_score: 183
  • Evalue 1.50e-43
cold-shock DNA-binding protein family similarity KEGG
DB: KEGG
  • Identity: 60.3
  • Coverage: 146.0
  • Bit_score: 183
  • Evalue 4.80e-44
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ADY54012.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.3
  • Coverage: 146.0
  • Bit_score: 183
  • Evalue 2.20e-43

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudopedobacter saltans → Pseudopedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 435
ATGGGGGATTCCTTTAACAAAAAAGCATTACAACAAAAGAAAGCAAAAAAAAGGCAGGATAAACTTGAACGCAGAAAAGAGCGCAAAGCCCACAACGATAAAGGTAAAAGTCTTGCAGAGATGACAGTTTACCTTGATGAGAATGGAAATTTTACGGATGTTCCCCCCGAAAAACAAAAAAGAAAGGAAATAAAAGTTGAAGATATCCAGCTTGGCGCAGCGCCGGTTTCTGAAGAAAAAGAATTTACCGGAACGGTGGTCTCCTTCTTTACAGAAAAATCTTTTGGTTTTATTACCGAAGATGGCACCCATGAATCTATATTTGTGCATAGTAATAATATGGATGAACCGGTTGGAGAGAAGGACAGGGTAACTTATGAGAAAGAAAGAACACCCAAAGGATACCAGGCCATCCATGTCAAAAAAATAAAGTGA
PROTEIN sequence
Length: 145
MGDSFNKKALQQKKAKKRQDKLERRKERKAHNDKGKSLAEMTVYLDENGNFTDVPPEKQKRKEIKVEDIQLGAAPVSEEKEFTGTVVSFFTEKSFGFITEDGTHESIFVHSNNMDEPVGEKDRVTYEKERTPKGYQAIHVKKIK*