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scnpilot_solids1_trim150_scaffold_202_3

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 10 / 38
Location: 1034..1618

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EIL91028.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EIL91028.1};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 194.0
  • Bit_score: 391
  • Evalue 7.00e-106
RNA polymerase factor sigma-70 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUY7_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 194.0
  • Bit_score: 391
  • Evalue 5.00e-106
  • rbh
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 93.3
  • Coverage: 194.0
  • Bit_score: 369
  • Evalue 6.40e-100

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
GTGAACAGCGCGATCGGCACCCTCGACGCGGATCTGCTGAGCGAGGTCCGCGAAACACCCGCCACCCTGGATGCGTTCCTGGCCCAGGTCGAACGGCGTGCGTTCCGCATGGCCGAACTGCAGCTGCGCCATCGCGAGGACGCGATGGACGCGGTGCAGGACGCCATGCTGCGGCTGGTCAGGCACTACCGCGACAAGCCCGCGACGGAATGGGCGCCGCTGTTCTGGGGCATCCTGCGCCGGCGCGTGGTGGACCTGCAGCGGCGCCGCAAGGTGCGCTCGATCGTGGTCGGCTGGCTGGGCGGCGGCCACGATGGCGACGGCGACGAACTGCCCGTGTGGGAGCCGGCCGATCCCGGCCAGGACCCGCTGGGCCGGCTGCATGACGTGCAGTCGTACGCCGACCTGGCCGCCGCGGTGCGGCAACTGCCGCAACGCCAGCGCGAAGCTTTCATGTTGCGCATGCTGGAAGGACTCGACGTGGCCGAAACCGCCCGTGCCATGGGCTGCTCCGAAGGCAGCGTGAAAACCCATCTGTCGCGTGCCATGCATCATTTGCGCGACCAACTGGAGGACTGGCGATGA
PROTEIN sequence
Length: 195
VNSAIGTLDADLLSEVRETPATLDAFLAQVERRAFRMAELQLRHREDAMDAVQDAMLRLVRHYRDKPATEWAPLFWGILRRRVVDLQRRRKVRSIVVGWLGGGHDGDGDELPVWEPADPGQDPLGRLHDVQSYADLAAAVRQLPQRQREAFMLRMLEGLDVAETARAMGCSEGSVKTHLSRAMHHLRDQLEDWR*