ggKbase home page

scnpilot_solids1_trim150_scaffold_532_19

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 10 / 38
Location: 24911..28444

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein IcmF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T5_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2328
  • Evalue 0.0
  • rbh
Type VI secretion protein IcmF {ECO:0000313|EMBL:EIL93076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2328
  • Evalue 0.0
type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 999.99
  • Bit_score: 1356
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3534
GTGGGCAAGCTTCTTGCGTTGTTCAAATCCCGCCTGTTCATCACCCTCGTCGGCTTGCTGCTGCTGTCGTTGCTGATCTGGTTCGGCGGTCCCTACCTCGGCTTCGGCGAGTCGCAGCCGCTGGCCAGCCCGGTGGTCCGCTTGCTGGTGATCATCGTGATCGTGGTGATCTGGGCGGTCTGGTTGCAGCTGCAACAGATGCGCGTGCGCGGCAAGGCCAGGCAGATGGCCAGCGACCTGAGCGATCAGGGCACCGCCCAGGCCGGCGGCGAGCGTGACGACCGCTCCGCCAACGAGCGGGCGCAGTTGCAGAACCGCTTCCAGGAGGCGGTGGAAACCCTGCGCAAGAATCGCAGCGGTGGAACCAATCTCTACGCGCTGCCCTGGTATGTGGTGATCGGGCCGCCGGGGTCCGGCAAGAGCACGCTGCTGCAGAACTCGGGCCTCAACTTCCCGCTGTCGAACAAGTTCGGCAAGGAAGCGATCCGCGGCGTTGGCGGCACGCGCAATTGCGACTGGTGGTTCACCGACGAGGCGGTATTCCTCGACACTGCCGGCCGCTACACCACCCAGGACTCCGACCGCGGCGCCGATGCATCGGCCTGGACCGAGTTCCTGAACCTGTTGCGCAAGTACCGCAAGCGCCGCCCGATCAACGGCGTGATCGTGGCGATGAGCCTGTCCGACCTGCTGACCCTGGATGCGAATGGCCGCCAGCAGCACATCCAGGCGGTTCGCCAGCGCCTGGACGAACTGGCCAAGCACCTGCGCATCGGCGTGCCGGCCTATCTGGTGTTCACCAAGTGCGACCTGGTCGCCGGCTTCACCGAGTTCTTCGACGACCTCAATCCCGAGTTGCGCAGCCAGGTCTGGGGCATGTCGTTCGCGGTCGACAAGACCATGGACGGCAGCGCGGCGAAGCAGTTCCTCGAAGAATTCAACCTGCTGCTGGACCGGCTCAACACGCGCATCCTCGATCGACTGCACGGCGAGCGCGATCGCACCCGGCGCGCGGCCATCCTGTCGTTCCCGCAGCAGCTCGGCGCCTTGCGCGACATCACGCGGCAGTTCGTCGAAGGCGTGTTCACCGGTCATCAGTACGACGCGCCGTTGCTGCTGCGTGGTGCCTACTTCACTTCGGGCACGCAGGAAGGCACGCCGATCGACCGCATGATGGGCGCGGTGGCACGCACCTTCGGGCTGGACGCCTCGCGCCTGCACGTGCCCGGCGCCCAGAGCCGCACCTTCTTCGTCGAACGCCTGCTTCGGGACGTGCTGTTCAAGGAATCCGGCTTTGCCGGCACCAATCCGAAGCTGGAGCGCCAGAAGACCCTGCTGCAGGCGGCCGCGTACATCGGCGTGCTGCTGGCCTGCGGCCTGCTGATCCTCGGCCTGGCCAGCAGCTACCGGCGCAACGGCGCCTACCTGAGCCAGGTGCAGGCGGCGTTGCAGAAGTATCCGGCGCAGAGCGACGCTTCGCTGGCGCCGAACCAGCAGGCCTATTTCGCGATGGTGCTGGAGCGGCTGGAGTCGCTGTCCAGCGCGGTGGATGTCGCCGAGCAGCACAAGGGCGACGTGCCGCTGTCGATGCGTTTCGGCCTGTACCAGGGCAATGCGGTCGGCGACGAAGTGCGTGACGCGTACTATCGCGAGCTGAACGCGCTGTTGCTGCCTGGCGTGGCTTCGCAGTTCCGGGCCGGCCTGGCCGCGAATGCGGGCGACCCGCAGATGCTCTATTACTACCTCAAGGGCTACCTGATGCTGGGCCAGCCCGAGCATCTGGATCACGACCAGATCGTGGCGCTGGCGGCTATCGAATGGCGGCGACTGTTCCCGTCCGACCCGGTGCTGCAGAAGGCGCTGACCAGGCATTTCGACGCGCTGGTCGGACACGAGGGGCGGCTGCGCGCGCTGAACCTGGATTCCAGCCTGGTGGAACAGGCGCGCAACACGCTGCGTACCGCAGACCTGGCCACGCTGATCTACGGCAACATCAAGCTGAACGCGGACAGCGGTGCGTATCCGCCGCTGCGACTGGACAAGGAGCTGGGCCTGCTCGGCAACGTCTACCGGCGCAAGAGCGGTGCGCCGCTTTCGGAACCGTTGCCTGCACTGTTCACGCAACCGGTGTTCAAGGACGAAGTCGACAAGGGCATCGATCAGGCAGTCACGCAGTTCGCCGCCGACGACTGGGTATTCGGCGCCACCAAGATAGATTCGTTGCAGAAGGCCCGGCTCGCCCAGCAGGTGCTGGCACTCTACGAGCAGGACTACATCAAGGCCTGGGATGACATCCTGGCGGATCTGGAGCTGCAGCCGATCGGCAACATCCAGGATGCCAGCACGATCGCGGCCAAGCTGGCCGGCCCCAACTCGCCGATGAAGCTGCTGCTTAAGGTGGTGAGCGACAACACCCACGACCTGATGCGCGCACCGCCCGCCGATGCGAAGGACAAGGCCGAGGACGTGGCCAAGAAGCTGGCCCAGAAGAAGGCGACCCAGTCCGCCCTGGCGCGCGCGCTCGCCCAGGCCGGCGCCGGGACTGCCGCGCCGGGTGACGATGCGGCCGCCGCCAAGCCGGGGCAGGTGATCAGCGACCACTTCGAGCAGATCAACAAGTTGAGCGAAGGTGGCCCGGGTGCCGCGCCGATCGATCAGACGCTCAAGGTGCTGGACGATCTCAGCAAGACCTTGCTGACCATGGGCGATTTCAGCTCGGCCGCTGGCCAGCCCAATCCGCAACTGCTGATGGCGCAGCAGGCGGCCGGCCAGCTGCCGGCGCCCGCGTCGGGCTGGTTTGCGGCGCTGACCGGCAAGAGCCAGGCGCTGGTGGCCAGCGGCACCAAGGGCGCGCTCGACGATCAGTACCAGCAGATGGTGGCCAAGGACTGCGCCGACTACACCCGTGGGCGCTATCCGTTCTCGCCGTCCAGCAACAACGATATCCCGTTGCAGAATTTCGGCGAGATGTTCGGCTATGGCGGGCGCTTCGACGGCTTCTACAACCAGACCGCGGGCAAGCTGATCGATGCCAGTGGCCGCAACTGGCAGTGGAAGAGCGGCCCTGGCGCGGTCAGTGGCTCGGCCGGCATGCTGGCGCAACTGCAGGGTGCCGACCGCATCAAGCAGATGTTCTTCCGCAGCGGCAACATGCCCGAGGTCGACTTCACCCTGCTTGCGCCCGTGCTCGACCCCGGCATCGGCAAGCTGGTGATCGAGGTCGATGGGCAGAAGTACGAGTACCAGTCCGGTGGCTCGACCACGGCCACCATGAAATGGCCGGGACCGACGCCGGGCCATGTCTCGATCTCGGCCTACGACACGGCGGGAACCCTGCTAACCACCTTCGACTATCGCGGCGACTGGGCGTTCTTCCGGGCGCTGCAGGCAGCGAATCTGCAGAAGCAGTCCGATCTGCGTTTCGTGGCCAGCTTCAACTTCGGTGGCCATGTCGCCAAGGTGACGGTCCAGGCCAACAACCTGAAGAACCCCTTCCTGAGCAACGCGCTGTCCAGTTTCCGGTGCGGAGGCTAG
PROTEIN sequence
Length: 1178
VGKLLALFKSRLFITLVGLLLLSLLIWFGGPYLGFGESQPLASPVVRLLVIIVIVVIWAVWLQLQQMRVRGKARQMASDLSDQGTAQAGGERDDRSANERAQLQNRFQEAVETLRKNRSGGTNLYALPWYVVIGPPGSGKSTLLQNSGLNFPLSNKFGKEAIRGVGGTRNCDWWFTDEAVFLDTAGRYTTQDSDRGADASAWTEFLNLLRKYRKRRPINGVIVAMSLSDLLTLDANGRQQHIQAVRQRLDELAKHLRIGVPAYLVFTKCDLVAGFTEFFDDLNPELRSQVWGMSFAVDKTMDGSAAKQFLEEFNLLLDRLNTRILDRLHGERDRTRRAAILSFPQQLGALRDITRQFVEGVFTGHQYDAPLLLRGAYFTSGTQEGTPIDRMMGAVARTFGLDASRLHVPGAQSRTFFVERLLRDVLFKESGFAGTNPKLERQKTLLQAAAYIGVLLACGLLILGLASSYRRNGAYLSQVQAALQKYPAQSDASLAPNQQAYFAMVLERLESLSSAVDVAEQHKGDVPLSMRFGLYQGNAVGDEVRDAYYRELNALLLPGVASQFRAGLAANAGDPQMLYYYLKGYLMLGQPEHLDHDQIVALAAIEWRRLFPSDPVLQKALTRHFDALVGHEGRLRALNLDSSLVEQARNTLRTADLATLIYGNIKLNADSGAYPPLRLDKELGLLGNVYRRKSGAPLSEPLPALFTQPVFKDEVDKGIDQAVTQFAADDWVFGATKIDSLQKARLAQQVLALYEQDYIKAWDDILADLELQPIGNIQDASTIAAKLAGPNSPMKLLLKVVSDNTHDLMRAPPADAKDKAEDVAKKLAQKKATQSALARALAQAGAGTAAPGDDAAAAKPGQVISDHFEQINKLSEGGPGAAPIDQTLKVLDDLSKTLLTMGDFSSAAGQPNPQLLMAQQAAGQLPAPASGWFAALTGKSQALVASGTKGALDDQYQQMVAKDCADYTRGRYPFSPSSNNDIPLQNFGEMFGYGGRFDGFYNQTAGKLIDASGRNWQWKSGPGAVSGSAGMLAQLQGADRIKQMFFRSGNMPEVDFTLLAPVLDPGIGKLVIEVDGQKYEYQSGGSTTATMKWPGPTPGHVSISAYDTAGTLLTTFDYRGDWAFFRALQAANLQKQSDLRFVASFNFGGHVAKVTVQANNLKNPFLSNALSSFRCGG*