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scnpilot_solids1_trim150_scaffold_569_9

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34

partial RP 38 / 55 MC: 2 BSCG 38 / 51 MC: 2 ASCG 10 / 38
Location: 13406..13951

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W1J8_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 181.0
  • Bit_score: 368
  • Evalue 4.20e-99
  • rbh
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EIL93339.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 181.0
  • Bit_score: 368
  • Evalue 5.90e-99
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 88.4
  • Coverage: 181.0
  • Bit_score: 333
  • Evalue 3.60e-89

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGTCGCCTGCCCCAGCGGGAACCAACGACAGCGATGACGTGCGCGCCGCCGCTGCCGGCGACCGCCGCGCATTCCAGCGGCTGTACCAGTTGCACGTGGGACGTGTGCACGGCGCGGTGTACCGGCTCGCCGGCTACGACCACGCGCGCGCCGAGGATCTCACCCAGGACGCCTTCATCCGTGCATGGCAGAAACTGCCGGGCTTCCGCCATGAAAGCGCGTTCGGCACCTGGCTGTACCGTCTGGCGGTGAACGTGGCGCTGATGGACATCCGCGCCCGCGGCGCCGATCCGGTCAGCATGATGGACGAGGAAGACCTGCCCGACGCCGGCGGCACGCCGTTCTGCGCCGCCGAGCGCGAGGAACTGGAACACGCCGTGGGCAAGCTGCCCCCGCGGGCCCGCGCAGTGCTGGTGCTGCACGACGTCGAAGGCTGGAAGCACGAGGAAATCGGTGCCGAACTGGGCATGGCGGTGGGCACCTCGAAAGCGCAGTTGCACCGCGCCCGCGGCCTGCTGCGCAAGGTATTGGGAGAAAGCTCATGA
PROTEIN sequence
Length: 182
MSPAPAGTNDSDDVRAAAAGDRRAFQRLYQLHVGRVHGAVYRLAGYDHARAEDLTQDAFIRAWQKLPGFRHESAFGTWLYRLAVNVALMDIRARGADPVSMMDEEDLPDAGGTPFCAAEREELEHAVGKLPPRARAVLVLHDVEGWKHEEIGAELGMAVGTSKAQLHRARGLLRKVLGESS*