ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

scnpilot_solids1_trim150_scaffold_7523_3

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12

partial RP 35 / 55 MC: 1 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: comp(1104..2396)

Top 3 Functional Annotations

Value Algorithm Source
conjugative transfer protein TrbI n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037450AB similarity UNIREF
DB: UNIREF100
  • Identity: 83.7
  • Coverage: 430.0
  • Bit_score: 720
  • Evalue 1.00e-204
Conjugation TrbI family protein {ECO:0000313|EMBL:EIM01227.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.3
  • Coverage: 430.0
  • Bit_score: 702
  • Evalue 3.10e-199
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 similarity KEGG
DB: KEGG
  • Identity: 63.7
  • Coverage: 430.0
  • Bit_score: 517
  • Evalue 5.50e-144

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1293
ATGGACACGACTGACCGCGAAGCCCAGCCGACGCCGAAAGTCGCGCCCGAGGGGATGGCGTTGCGTGCAGCGCCGCGCGCGGTCACGCGGCTCAACCGGCGCACGCTCGCGGTGTCCAGCACGCTCCTGGTGGTCGCGGTTGCCGCAGCCTCGATGTGGGCACTGCAATCGAAGGGCAGACGTGGCCCGGCCGATCAGACCAATCTTTACCACGTTGATCGCGTCGCCAAGGCCGATGACCTCGACCAGTTGCCTGCCGACTATTCGAAGCTGCCCGGGAAGCCCGCGCCGGCACCCGCCGCGAGCGTGCCTCAGCTTGGGCCGCCGCTGCCCGGTGACATAGGGGCAGCTTCGGCTGTGACGCCGTTGCCAAATGGCGCCGTGGCTCCGGGGCCATCGGCTGAGAGTGTCGATCGGCAACGCCAGGCCGAGGAGATTGCGCGCTCGGCAGTGTTCTTCCGCACCAGCAGCAACAGCGGCAAGCAAGAAGCGGCTGCGGCCGTAGCACCTGCTGCACCGCCAAGCGGTGCCCTGGCCAGCCCGTTCAATCCGATGGGTGCCGGCCCGGCTTCCACGGCGGCACAGCCCAACGATCCGACGGCTCTCCAGAACCGGCAAGGCCAGAAGGAAACGTTTATGGCCCAAGGCGGCGATGCCGCTACGAGCAATACCGGCACCCTGCAGGCGCCGCCTTCGCCGTACACCGTGATGGCAGGCACCATCATCCCAGCGGCGCTAGTGACGGGCATCAACTCCGACTTGCCGGGGCAGATCATCGCCGAGGTGACGCAGCCGGTGTATGACACAGCGACGGGCCACTATCTCTTGATCCCGCAGGGCTCGCGCCTGATCGGCCGCTACGACAGCCAGGTCGCCTTCGGGCAGCGCCGCGTGCTGCTGGTGTGGCTGCGTCTGGTGCTGCCCGACACCTCGTCGATTGCGCTGGACAAGCTGCCCGGCATCGACCCGGCGGGCTATGCCGGTTTGGAGGACGGCGTGGACTGGCACTGGAGCCGCATCCTGGCGGGTGCGGCGCTGTCCACGTTGCTGGGGGTCAACGCCGAGCTGGCCGTCTCCAATCAGAATCAGGCCAACGGCAACACCGTGATCGCTTTGCGCGACAGCGCGCAGGACACCACCAACCAGATCGGGCAGGAGATCACGCGCCGCAACCTGAGCGTCCAGCCGACGCTGACCGTGCGGCCGGGATTCCAGGTCAACGTCATGGTGAACAAGGACCTGGTGCTGCGGCCGTACCAGCCGCTCTTTATCCAGCGAGGTCCAATGCCATGA
PROTEIN sequence
Length: 431
MDTTDREAQPTPKVAPEGMALRAAPRAVTRLNRRTLAVSSTLLVVAVAAASMWALQSKGRRGPADQTNLYHVDRVAKADDLDQLPADYSKLPGKPAPAPAASVPQLGPPLPGDIGAASAVTPLPNGAVAPGPSAESVDRQRQAEEIARSAVFFRTSSNSGKQEAAAAVAPAAPPSGALASPFNPMGAGPASTAAQPNDPTALQNRQGQKETFMAQGGDAATSNTGTLQAPPSPYTVMAGTIIPAALVTGINSDLPGQIIAEVTQPVYDTATGHYLLIPQGSRLIGRYDSQVAFGQRRVLLVWLRLVLPDTSSIALDKLPGIDPAGYAGLEDGVDWHWSRILAGAALSTLLGVNAELAVSNQNQANGNTVIALRDSAQDTTNQIGQEITRRNLSVQPTLTVRPGFQVNVMVNKDLVLRPYQPLFIQRGPMP*