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scnpilot_solids1_trim150_scaffold_12923_3

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_12

partial RP 35 / 55 MC: 1 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: 1529..2188

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLN4_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 83.8
  • Coverage: 222.0
  • Bit_score: 347
  • Evalue 7.10e-93
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 222.0
  • Bit_score: 347
  • Evalue 1.00e-92
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 82.9
  • Coverage: 217.0
  • Bit_score: 340
  • Evalue 3.60e-91

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Taxonomy

Rhodanobacter fulvus → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 660
ATGAATAGCAGAGCCCCAAACGAGCAACAGTCCGAGATCAAGGCGCTGATCGCCAAAGGTCTGGAGCAGGGTTACCTCACCTACGCCGAGATCAACGACCACTTGCCTGAGGACGTCGTCGATCCCGAGCAGATCGAAGACATCATGGCCGTGCTCAAGGGCGTCGGCATCGAGGTGCAGGACGCCGCGCCTGACGCCGACACCCTGGCCGACGGTGCCGGTGCCGGCGACGACGATGCCGCCGCCGAAGAAGCCGTCGCGCTGCTCTCGGCCGTGGACGCCGAGGTCGGGCGCACCACGGACCCCGTGCGCATGTACATGCGCGAGATGGGCACCGTCGAGCTGCTCACGCGTGAGGGCGAGATCGTCATCGCCAAGCGCATCGAGGAGGGCCTGAGCCAGGTGCAGACCGCGCTGGCGAGCTTCCCGCTGACCATCGAGCTGCTGCTCGAGGAATACGACCAGCACCTGGACGGCAAGCGTCGCCTGAGCGAGATCCTGGCCGGCTTCCTCGACCTGGAAGAGGCCGCCGACCTGGCCCGCAAGGAAGCCGAGATCGCGCGCAAGGAAAAGGAAGCGATAGCGGCGTTGCGTCCCGAGGCGGAAGCCGACGACGAGGATGGGGACGAGGACGAAGGCGAAGAGGCCGAAGCGTCCTGA
PROTEIN sequence
Length: 220
MNSRAPNEQQSEIKALIAKGLEQGYLTYAEINDHLPEDVVDPEQIEDIMAVLKGVGIEVQDAAPDADTLADGAGAGDDDAAAEEAVALLSAVDAEVGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGLSQVQTALASFPLTIELLLEEYDQHLDGKRRLSEILAGFLDLEEAADLARKEAEIARKEKEAIAALRPEAEADDEDGDEDEGEEAEAS*