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scnpilot_solids1_trim150_scaffold_11886_1

Organism: SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_68_7

partial RP 31 / 55 MC: 1 BSCG 33 / 51 MC: 2 ASCG 8 / 38 MC: 1
Location: comp(1..2091)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 697.0
  • Bit_score: 1235
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 89.7
  • Coverage: 697.0
  • Bit_score: 1235
  • Evalue 0.0
  • rbh
Transcription-repair-coupling factor n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSK6_SPHAL similarity UNIREF
DB: UNIREF100
  • Identity: 89.7
  • Coverage: 697.0
  • Bit_score: 1235
  • Evalue 0.0
  • rbh

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Taxonomy

Sphingopyxis alaskensis → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2091
ATGACCCGGACCGCCGCCGACATCTTCGCCGCCATCGGGTCGGCGTCGGCGCCCCTGACGCTGGCGCGCGCCGCCGACGGATTCCTGCCGCTACTGCTCGCCGATCTGGCGCGGGCGAGCGACAAGAGGCTGCTTTACGTCGCGACCGACGATGCGGCGATGCAGGCGATCGCCGACGCCGCGCCCTTCTTCGCGCCCGACCTGGTCGTCCACCGCTTTCCGGCGTGGGACTGCCTGCCTTATGACCGCGCCGGGCCGTCGATGCGCGTCAGCGCCGACCGGCTGGCGACGCTGTCGGCACTACAGGCGCCCCCCAGGCGCGGCGAGCTGATCCTGACCACCGTCGCCGCGATCACCCAGCGCACGCTGATCCCGTTCCGTATCCGCCAGCTCGCGACGACGCTCGCGGCCGGACAGCGGATCGACCGCGACGCGCTCGCCGAACTGCTGGTCGCCAGCGGCTTCAACCGCGTCGATACCGTCACCGACCAGGGCGAGTTCGCGGTGCGCGGCGGCATCGTCGACCTGTTCCCGGCGGGCGAGGATGCCGGATTGCGCGTCGATTTCTTCGGCGACGAGATCGAGAGCATCCGCCGCTTCGACCCCGCCGACCAGCGCAGCCTGGGCCCCGCCAAGGCGCTGCAACTGCTCCCGGCCGCTGAAACCCTGCTCGACGAGGCAACGATCAAGCGCTTCCGCACCCGCTATCGCGAGATATTCGGGGCGCAGGCGACCGGCGACCCGCTCTATCAGGCGGTGAGCGAGGGGCGGCGGCAGGCGGGAATGGATCATTGGCTGCCGCTGTTCGAGGAACGGCTGGCGACGCTGTTCGATCATATCGACCCGGCGACCCCGGTGCTGCGCGGCCACCGCACCGATGCGACAGCCGAGACGCGCTTCGACGCGATCCGCGACTATCACGCGAACCGCGTCGCCGCCGAGCAGGAGCAGGCGGGCAGCTATCGCCCGCTCGCCCCCGAAGCGCTCTACTTGACCGAGGCCGAGTGGACCGAGGCGGAGGCGGCGCGCCCTATCCATGTCGTCACCCCGTTCGCCATTCCCGAGGCACCGACGGTTCTCGACCTCGAAAGCTTCGCGGCGCGCGATTTCACGCCCGAGCGCACCGCCGACCTCAATGTCTACGACAAGGTGGCCGACCATCTGTCCGACGAACGGCGCAGAGGGCGGCGGACGATTATCGCCAGCTATTCGGCAGGCGCGCGGGATCGGCTGGCGGGGCTGCTCAAAGAGCATGGCGTCAGCGGGCTGGCGCAGGTCGATACGTGGCAGGAAGCGCTGGGTTCAACGTCCGTTCGTGTCGAGCGAAGTCGAGACACCCCGCGGGATAGCGCCACGCCGAGAGGCGTCTCGACTTCGCTCGACGCGAACGGGTTGGGAACGAATAATCCGGGGACAGACACCGTCGCCCTGATCGTGCTGCCCCTCGACCACGGCTTCGCGACCGACGCGATCAGCCTGCTGACCGAACAGGACATCCTCGGCGAGCGACTGGTCCGGCGGCAGAAGCGGCGCAAGAGCGCCGACGCCTTCCTTGCCGAACTGGCGACGCTCAGCGTCGGCGATCTCGTCGTCCACCTCGATCATGGCATCGGCCGCTACGAGGGGCTGACCTCGATCCCGGTCGGGAACAGCCCGCACGACTGCGTCGCGCTGACCTATGCGGGAGGCGACAAGCTTTACGTGCCGGTCGAGAATCTCGACGTCCTGTCGCGCTACGGCGGCGAGAGCGAGGGGGTCGCGCTCGACAGGCTGGGCGGCGAAGCGTGGCAGCGGCGCAAGGCGCGGATGAAGGAGCGCATCCGCGAGATCGCGGGCGAACTGCTCGCGACCGCGGCGCAGCGCGCGCTGCGGTCGGGCGAAATGCTGGCGCAGGATGCCGCCTACCCCGCCTTCGCAGACCGCTTCCCCTATCAGGAAACCGACGATCAGGACCGCGCGATCGGTGACGTGCTCGCCGACATGGCATCGGGGCGGCCGATGGACCGGCTGGTGTGCGGCGACGTCGGCTTCGGCAAGACCGAAGTGGCGCTGCGCGCCGCCTTCGTCGCGGCGATGGCGGGGGTGCAGGTC
PROTEIN sequence
Length: 697
MTRTAADIFAAIGSASAPLTLARAADGFLPLLLADLARASDKRLLYVATDDAAMQAIADAAPFFAPDLVVHRFPAWDCLPYDRAGPSMRVSADRLATLSALQAPPRRGELILTTVAAITQRTLIPFRIRQLATTLAAGQRIDRDALAELLVASGFNRVDTVTDQGEFAVRGGIVDLFPAGEDAGLRVDFFGDEIESIRRFDPADQRSLGPAKALQLLPAAETLLDEATIKRFRTRYREIFGAQATGDPLYQAVSEGRRQAGMDHWLPLFEERLATLFDHIDPATPVLRGHRTDATAETRFDAIRDYHANRVAAEQEQAGSYRPLAPEALYLTEAEWTEAEAARPIHVVTPFAIPEAPTVLDLESFAARDFTPERTADLNVYDKVADHLSDERRRGRRTIIASYSAGARDRLAGLLKEHGVSGLAQVDTWQEALGSTSVRVERSRDTPRDSATPRGVSTSLDANGLGTNNPGTDTVALIVLPLDHGFATDAISLLTEQDILGERLVRRQKRRKSADAFLAELATLSVGDLVVHLDHGIGRYEGLTSIPVGNSPHDCVALTYAGGDKLYVPVENLDVLSRYGGESEGVALDRLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGEMLAQDAAYPAFADRFPYQETDDQDRAIGDVLADMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGVQV