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scnpilot_solids1_trim150_scaffold_10844_4

Organism: SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_68_7

partial RP 31 / 55 MC: 1 BSCG 33 / 51 MC: 2 ASCG 8 / 38 MC: 1
Location: comp(2163..3512)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URN0_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 86.3
  • Coverage: 452.0
  • Bit_score: 756
  • Evalue 1.80e-215
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.3
  • Coverage: 452.0
  • Bit_score: 756
  • Evalue 2.50e-215
RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 85.2
  • Coverage: 452.0
  • Bit_score: 742
  • Evalue 8.40e-212
  • rbh

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1350
GCCTATCTGGCCGAGGCGCTCGAAGGCAATCCGCTGCTCGACACCGCCTCCGCCGATGGCGACGGGGCGGGCGACGAGCGCGGGGAAGAGGCGGGCGCGGCGGCGCCCGAGGCCGCCGGTGAAGGTCCCGACGCCGAACCGACGCTCGCCTCCGACGCGGGCAGCGACCTCGACGTCGATTTCGACGAGCGCTTCCACCACGACAGCGCGAGCGACAGCGTCGGGCTGTCGGGATCGGGCGAGGCCGTCGATTTCGACAGTTTCGCGGGCGCCGAGGGCACGCTCTACGACCATCTGCTCGCGCAGGTCGGCGAGCGCTTCGACGGGATCGAGGCGATGGTCGCCGAACAGATCGTCGCGCTGATCGACGAGGCGGGCTATCTGCGCGCCGATCTTGCCGACCTGGCGCAGCGGCTCGGCGTGCCGCTGGCGCTGGTCGAGGCGGTGCTGGCGGGGGTGCAGGGCTTCGACCCATCGGGCGTCGGCGCGCGCGACCTCGCCGAATGCGTCGCGATCCAGGCGCGCGAGGCCGACCGCTACGACCCCGCGATGGCGACGATGATCGCGCACCTGGACCTGGTGGCGAAAGGAGCCTTTCCGCAGCTTAAGCGCATCTGCGGGGTCGACGACGAGGATCTGGCCGACATGATCCGCGAGCTGCGCGGCTACGACCCCAAGCCGGGGCTGCGCTTCGGCGGCGGCGCGGCGCAGGCGGTCGTCCCCGACCTGTTCGTGCAGCGCACCGCGCAGGGCTGGGCGGTCGAGGTCAACAGCGGCACGCTGCCGCGCCTGCTCGTCAATCGCCGCTATTACAGCGAACTGGCGCGCGGGGCGGCGGCGAAGAGCAAGGCGTGGCTGTCCGAACAGCTCGCGGGCGCCAACTGGCTGGTGCGCGCGCTCGACCAGCGCCAGCGCACGATCGTCAAGGTGGCGAGCGAGATCGTCCGGCAGCAGGAGGGCTTCTTCCTCCACGGCGTCGCGCACATGCGCCCGCTGACGCTGCGGCAGGTCGCCGAGGCGATCGGGATGCACGAATCGACCGTCAGCCGCGTCACCAGCAACAAATATCTGTCGTGCGCGCGCGGCCTGTTCGAGCTGAAGTATTTCTTCTCGAGCGGCATCGCGGCGACCGACGGCGACGGCGCGGTGTCGGCCGAGGCGATCAAGAGCCGCATCCGCGCGCTGATCGAGGCCGAGGATGCCAAGGCGATCCTGTCCGACGAGACGATCGCGCAGAAGCTGGCGGCCGAGGGCCACGCGGTCGCGCGGCGCACCGTGGTCAAATATCGCGAGGCGATGGGCTATGGCTCGTCGGTGCAGCGGCGGCGGCAGAAGGCGCTGGCGGGGTAG
PROTEIN sequence
Length: 450
AYLAEALEGNPLLDTASADGDGAGDERGEEAGAAAPEAAGEGPDAEPTLASDAGSDLDVDFDERFHHDSASDSVGLSGSGEAVDFDSFAGAEGTLYDHLLAQVGERFDGIEAMVAEQIVALIDEAGYLRADLADLAQRLGVPLALVEAVLAGVQGFDPSGVGARDLAECVAIQAREADRYDPAMATMIAHLDLVAKGAFPQLKRICGVDDEDLADMIRELRGYDPKPGLRFGGGAAQAVVPDLFVQRTAQGWAVEVNSGTLPRLLVNRRYYSELARGAAAKSKAWLSEQLAGANWLVRALDQRQRTIVKVASEIVRQQEGFFLHGVAHMRPLTLRQVAEAIGMHESTVSRVTSNKYLSCARGLFELKYFFSSGIAATDGDGAVSAEAIKSRIRALIEAEDAKAILSDETIAQKLAAEGHAVARRTVVKYREAMGYGSSVQRRRQKALAG*