ggKbase | organisms

Consensus taxonomy: Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Micrococcales_1

Properties

Avg. coverage: 4.78 Longest contig: 8.51 Kbp Bin length: 1.90 Mbp GC content: 69.60 %

Contigs count: 1001 Features count: 2568 rRNAs count: 0 tRNAs count: 15

Genome completeness

partial RP 26 / 55 MC: 1 BSCG 26 / 51 MC: 2 ASCG 9 / 38

Displaying items 451-500 of 1001 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_19521 Species: Microbacterium azadirachtae (50%)	2	1790 bp	70.84	4.94	94.69
scnpilot_solids1_trim150_scaffold_40074 Species: Arthrobacter phenanthrenivorans (50%)	2	1066 bp	68.11	3.38	91.18
scnpilot_solids1_trim150_scaffold_10122 Species: Microbacterium testaceum (50%)	2	2863 bp	67.83	4.35	97.76
scnpilot_solids1_trim150_scaffold_41042 Species: Microbacterium azadirachtae (50%)	2	1047 bp	71.35	4.87	86.25
scnpilot_solids1_trim150_scaffold_28418 Species: Microbacterium mangrovi (50%)	2	1369 bp	72.46	5.70	87.87
scnpilot_solids1_trim150_scaffold_43676 Species: Arthrobacter phenanthrenivorans (100%)	2	1000 bp	68.60	4.20	90.30
scnpilot_solids1_trim150_scaffold_41812 Species: Arthrobacter phenanthrenivorans (100%)	2	1032 bp	66.86	4.36	83.72
scnpilot_solids1_trim150_scaffold_30628 Species: Microbacterium mangrovi (50%)	2	1298 bp	71.42	4.39	99.15
scnpilot_solids1_trim150_scaffold_15140 Species: Arthrobacter crystallopoietes (50%)	2	2147 bp	68.19	4.05	94.46
scnpilot_solids1_trim150_scaffold_34174 Species: Microbacterium ginsengisoli (100%)	2	1198 bp	67.03	5.01	87.65
scnpilot_solids1_trim150_scaffold_21326 Species: Microbacterium ginsengisoli (50%)	2	1683 bp	66.96	3.74	99.47
scnpilot_solids1_trim150_scaffold_41047 Species: Arthrobacter phenanthrenivorans (100%)	2	1047 bp	70.01	4.30	94.27
scnpilot_solids1_trim150_scaffold_15657 Species: Microbacterium mangrovi (100%)	2	2095 bp	68.50	4.44	100.10
scnpilot_solids1_trim150_scaffold_25282 Species: Microbacterium sp. SUBG005 (50%)	2	1491 bp	70.42	5.94	95.98
scnpilot_solids1_trim150_scaffold_41307 Species: Microbacterium sp. C448 (50%)	2	1042 bp	66.99	3.74	96.16
scnpilot_solids1_trim150_scaffold_30636 Species: Microbacterium sp. SA39 (100%)	2	1760 bp	69.38	4.86	103.30
scnpilot_solids1_trim150_scaffold_26245 Species: Microbacterium sp. SUBG005 (50%)	2	1451 bp	69.33	4.55	100.07
scnpilot_solids1_trim150_scaffold_31045 Species: Arthrobacter chlorophenolicus (50%)	2	1285 bp	68.56	3.97	93.39
scnpilot_solids1_trim150_scaffold_15661 Species: Microbacterium sp. TS-1 (50%)	2	2095 bp	68.69	5.23	87.92
scnpilot_solids1_trim150_scaffold_29350 Species: Microbacterium mangrovi (50%)	2	1338 bp	67.79	3.81	82.96
scnpilot_solids1_trim150_scaffold_32719 Species: Microbacterium ginsengisoli (50%)	2	1236 bp	68.45	4.49	98.30
scnpilot_solids1_trim150_scaffold_38959 Species: Arthrobacter phenanthrenivorans (100%)	2	1089 bp	66.94	3.44	98.90
scnpilot_solids1_trim150_scaffold_22495 Species: Arthrobacter phenanthrenivorans (100%)	2	1621 bp	70.20	3.70	93.83
scnpilot_solids1_trim150_scaffold_13488 Species: Brevibacterium casei (50%)	2	2332 bp	73.11	5.08	92.24
scnpilot_solids1_trim150_scaffold_33776 Species: Microbacterium sp. CH12i (100%)	2	1208 bp	66.97	3.97	92.38
scnpilot_solids1_trim150_scaffold_25288 Species: Microbacterium mangrovi (100%)	2	1491 bp	71.43	5.53	81.89
scnpilot_solids1_trim150_scaffold_34697 Species: Arthrobacter sp. AK-YN10 (50%)	2	1186 bp	72.34	3.04	100.17
scnpilot_solids1_trim150_scaffold_41827 Species: Microbacterium testaceum (50%)	2	1032 bp	71.80	4.36	87.21
scnpilot_solids1_trim150_scaffold_27165 Species: Arthrobacter phenanthrenivorans (100%)	2	1415 bp	68.62	4.98	99.22
scnpilot_solids1_trim150_scaffold_32981 Species: Microbacterium mangrovi (50%)	2	1229 bp	68.92	3.66	65.17
scnpilot_solids1_trim150_scaffold_20927 Species: Microbacterium sp. oral taxon 186 (50%)	2	1704 bp	67.02	4.14	100.00
scnpilot_solids1_trim150_scaffold_33271 Species: Arthrobacter phenanthrenivorans (50%)	2	1222 bp	67.10	4.17	91.57
scnpilot_solids1_trim150_scaffold_27938 Species: Microbacterium ginsengisoli (50%)	2	1386 bp	67.75	4.44	80.52
scnpilot_solids1_trim150_scaffold_38715 Species: Arthrobacter phenanthrenivorans (100%)	2	1094 bp	69.65	4.66	87.48
scnpilot_solids1_trim150_scaffold_35917 Species: Microbacterium azadirachtae (50%)	2	1155 bp	68.66	4.29	100.26
scnpilot_solids1_trim150_scaffold_29365 Species: Microbacterium azadirachtae (50%)	2	1338 bp	69.88	4.71	99.10
scnpilot_solids1_trim150_scaffold_13246 Species: Microbacterium sp. C448 (50%)	2	2360 bp	71.27	4.96	90.13
scnpilot_solids1_trim150_scaffold_18982 Species: Microbacterium testaceum (50%)	2	1826 bp	68.51	5.18	100.06
scnpilot_solids1_trim150_scaffold_31832 Species: Leifsonia aquatica (50%)	2	1261 bp	69.63	5.71	100.16
scnpilot_solids1_trim150_scaffold_11137 Species: Arthrobacter phenanthrenivorans (50%)	2	2670 bp	69.03	4.72	94.16
scnpilot_solids1_trim150_scaffold_22514 Species: Intrasporangium chromatireducens (50%)	2	1620 bp	68.83	5.28	101.67
scnpilot_solids1_trim150_scaffold_38979 Species: Arthrobacter phenanthrenivorans (50%)	2	1089 bp	66.94	3.03	98.90
scnpilot_solids1_trim150_scaffold_37692 Species: Intrasporangium chromatireducens (50%)	2	1115 bp	67.62	4.44	90.94
scnpilot_solids1_trim150_scaffold_24620 Species: Arthrobacter phenanthrenivorans (100%)	2	1519 bp	69.98	3.85	100.13
scnpilot_solids1_trim150_scaffold_29884 Species: Arthrobacter phenanthrenivorans (100%)	2	1321 bp	67.68	4.31	85.84
scnpilot_solids1_trim150_scaffold_25564 Species: Microbacterium mangrovi (50%)	2	1480 bp	71.15	3.65	100.13
scnpilot_solids1_trim150_scaffold_20174 Species: Microbacterium mangrovi (50%)	2	1752 bp	69.24	4.37	94.52
scnpilot_solids1_trim150_scaffold_16086 Species: Microbacterium hominis (50%)	2	2053 bp	66.63	4.46	92.06
scnpilot_solids1_trim150_scaffold_34206 Species: Microbacterium sp. SUBG005 (50%)	2	1198 bp	69.53	4.88	98.16
scnpilot_solids1_trim150_scaffold_15686 Species: Microbacterium sp. TS-1 (50%)	2	2092 bp	70.08	4.23	97.51

Displaying items 451-500 of 1001 in total

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Micrococcales_69_5

SCNPILOT_SOLID_1_TRIM150_Microbacterium_70_5

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help