ggKbase home page

scnpilot_solids1_trim150_scaffold_9850_3

Organism: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38
Location: 2409..2921

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, expansion family 1 n=1 Tax=Flavobacterium sp. CF136 RepID=J3BZC4_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 34.1
  • Coverage: 176.0
  • Bit_score: 105
  • Evalue 6.30e-20
RNA polymerase sigma-70 factor, expansion family 1 {ECO:0000313|EMBL:EJL61176.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 34.1
  • Coverage: 176.0
  • Bit_score: 105
  • Evalue 8.80e-20
RNA polymerase, sigma-24 subunit, ecf subfamily similarity KEGG
DB: KEGG
  • Identity: 34.7
  • Coverage: 170.0
  • Bit_score: 103
  • Evalue 5.70e-20

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium sp. CF136 → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 513
ATGCAGGAAAATTTGGAAAGCAGACATATATATAATGAAAAGGAGTTAGCCATCCGGATCGCCAACGGTGATAACGAAGCGTTTGATCGACTGTTTTATTATTACTGGGATCATGTGTATTCCGTGGCGCTTGTCATGAGCAAATCGCCTGCCATGGCAGAGGACATCGCGCAGGAAGTTTTCCTTTCCCTGCTGGAAAACCGCGCCGCCCTCGCCGGCGTGGAAAATTTAAAGGGCTATTTATATAATCACATAAAATTCAATCTTCACAAACGGCTTCGCCGGCTGCGGGTAGAAGACGCTTATCAACACTACCTGCTATCGAAACTACAGGGGGTGAACTCCCCTGCGCCGGATGACAGCCTCGCTGCTAAGGAATTAATGAAAGCAATAAGCGGCGGACTGGAACTGCTGCCGCCCCAGCAAAAACGGGCATTCCAGCTGAGCCGCTGGAAGGGATTGAGTCACGATGAAATTGGCTGGGAAATGGGTATCAGCAGCCGGACCGTAAAA
PROTEIN sequence
Length: 171
MQENLESRHIYNEKELAIRIANGDNEAFDRLFYYYWDHVYSVALVMSKSPAMAEDIAQEVFLSLLENRAALAGVENLKGYLYNHIKFNLHKRLRRLRVEDAYQHYLLSKLQGVNSPAPDDSLAAKELMKAISGGLELLPPQQKRAFQLSRWKGLSHDEIGWEMGISSRTVK